Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 2.8e-255 884.8 457 100.0
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 5.6e-235 817.4 453 94.3
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.9e-219 765.8 451 88.2
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 9.9e-208 726.9 452 84.3
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 2.4e-198 695.7 457 80.5
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 4.6e-197 691.4 456 81.6
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 1.1e-195 686.8 455 79.6
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 4.0e-193 678.3 455 78.9
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 1.3e-183 646.7 451 76.5
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 1.3e-180 636.7 499 69.5
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 6.9e-177 624.4 453 74.2
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 6.5e-167 591.3 468 68.8
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 3.2e-166 589.0 465 69.5
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 5.5e-166 588.2 459 70.8
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.6e-163 579.3 466 69.7
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 9.1e-161 570.9 464 66.8
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 2.0e-160 569.7 465 67.5
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.0e-160 569.7 466 68.9
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.0e-159 567.4 457 68.5
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 1.4e-158 563.5 466 68.5
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 1.6e-157 560.1 449 69.3
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 7.9e-157 557.8 466 66.3
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 1.1e-155 553.9 465 66.5
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.5e-155 553.5 442 68.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 7.4e-155 551.2 469 64.6
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 7.4e-155 551.2 461 67.7
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.3e-154 550.4 460 66.7
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 2.8e-154 549.3 454 67.2
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 3.7e-154 548.9 462 66.5
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 3.7e-154 548.9 455 66.8
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 4.8e-154 548.5 454 66.5
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 8.2e-154 547.7 448 68.1
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 1.1e-153 547.4 467 66.2
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 9.1e-153 544.3 446 67.5
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 4.5e-152 542.0 450 67.8
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 4.5e-152 542.0 444 68.9
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 6.5e-151 538.1 458 66.4
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 7.2e-150 534.6 481 64.9
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.4e-148 530.4 483 62.3
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 2.3e-148 529.6 448 65.4
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.0e-148 528.9 469 62.7
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 4.4e-147 525.4 459 64.1
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 9.7e-147 524.2 441 65.5
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 2.2e-146 523.1 460 63.7
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.7e-146 522.3 450 62.2
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 3.7e-146 522.3 443 66.8
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 1.8e-145 520.0 454 62.3
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.7e-144 516.2 454 62.6
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 2.2e-143 513.1 436 63.5
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 2.9e-143 512.7 442 65.2
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 4.2e-142 508.8 443 64.6
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 2.3e-140 503.1 434 65.9
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 4.0e-140 502.3 438 64.2
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 2.6e-139 499.6 447 61.3
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 4.4e-139 498.8 444 63.7
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 2.8e-138 496.1 449 59.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 6.3e-138 495.0 439 65.8
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 6.3e-138 495.0 438 62.6
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 1.8e-137 493.4 443 62.8
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 2.4e-137 493.0 435 60.5
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 5.4e-137 491.9 450 61.3
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 9.1e-137 491.1 435 62.1
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 2.0e-136 490.0 445 59.3
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 3.5e-136 489.2 445 58.9
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 5.9e-136 488.4 457 63.7
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 2.3e-135 486.5 436 60.3
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 2.9e-135 486.1 430 62.1
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 8.6e-135 484.6 437 61.1
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.5e-134 483.8 437 61.8
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 3.2e-134 482.6 434 59.0
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 2.1e-133 479.9 436 59.6
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 6.1e-133 478.4 438 61.6
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 8.0e-133 478.0 434 59.7
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 1.0e-132 477.6 463 60.3
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 6.8e-132 474.9 443 60.7
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 6.3e-130 468.4 440 58.0
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 4.1e-129 465.7 434 58.3
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 5.9e-128 461.8 439 60.6
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 3.8e-127 459.1 442 56.3
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 5.0e-127 458.8 391 67.8
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 6.6e-127 458.4 446 59.2
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 1.5e-126 457.2 620 47.7
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.9e-126 456.8 455 58.0
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 1.4e-124 450.7 462 55.4
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 1.4e-124 450.7 415 61.7
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 3.5e-120 436.0 351 68.1
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 6.2e-117 425.2 395 64.1
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 1.4e-116 424.1 330 69.7
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.3e-114 417.5 395 63.5
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.0e-112 410.2 444 54.7
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 1.1e-110 404.4 329 68.7
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 3.4e-107 392.9 400 56.0
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 3.4e-107 392.9 316 66.5
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 4.6e-104 382.5 359 63.5
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 7.1e-97 358.6 304 67.8
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.0e-95 353.2 333 61.6
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.1e-86 324.7 392 49.0
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.6e-85 319.7 263 69.6
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.5e-83 314.3 398 49.5
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.1e-78 298.1 299 59.5
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.5e-78 297.0 335 50.1
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.1e-76 291.6 270 58.9
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.6e-64 249.6 420 39.3
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 2.2e-61 240.7 283 50.2
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 2.8e-61 240.4 339 49.0
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 6.9e-60 235.7 161 80.7
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 5.1e-55 219.5 177 61.0
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 4.5e-51 206.5 357 42.3
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 5.0e-50 203.0 593 31.7
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 9.1e-44 182.2 97 89.7
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.7e-42 177.9 98 85.7
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 2.2e-42 177.6 102 83.3
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.8e-39 167.9 156 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 8.8e-39 165.6 258 43.0
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 4.4e-38 163.3 109 78.0
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 7.2e-33 146.0 179 55.9
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.0e-31 142.1 176 55.7
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 8.5e-26 122.5 100 63.0
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 5.5e-25 119.8 162 51.9
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.0e-18 99.0 114 49.1
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 1.0e-18 99.0 105 53.3
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 2.3e-18 97.8 54 85.2
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 5.5e-17 93.2 340 26.8
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.2e-16 92.0 101 47.5
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 8.0e-16 89.4 49 81.6
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 5.2e-15 86.7 50 80.0
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 5.2e-15 86.7 50 80.0
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 2.2e-13 81.3 52 73.1
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.2e-11 75.5 81 44.4
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 1.0e-10 72.4 56 58.9
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 2.9e-10 70.9 56 60.7
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 3.3e-09 67.4 41 78.0
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 4.7e-08 63.5 33 87.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 6.1e-08 63.2 101 39.6
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 1.0e-07 62.4 52 61.5
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 1.4e-07 62.0 38 76.3
VMungo1383G0064 Vigna mungo HOM05D005431 ORTHO05D006762 2.3e-07 61.2 50 72.0


User provided reference genes

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