Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.3e-174 616.3 305 100.0
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 3.4e-119 432.2 319 72.7
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.2e-110 402.9 283 72.1
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 1.1e-106 390.6 254 75.2
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 7.3e-106 387.9 252 76.6
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 9.5e-106 387.5 254 74.8
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 4.7e-105 385.2 251 75.7
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.4e-104 383.6 256 75.0
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 4.0e-104 382.1 266 72.9
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 4.0e-104 382.1 251 73.3
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 8.9e-104 380.9 256 73.4
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 2.9e-102 375.9 249 74.3
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 6.4e-102 374.8 261 73.2
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 8.3e-102 374.4 249 73.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 2.4e-101 372.9 249 73.1
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 4.1e-101 372.1 250 72.4
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 7.0e-101 371.3 251 72.1
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 7.0e-101 371.3 249 72.7
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.2e-100 370.5 281 68.0
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 1.2e-100 370.5 247 73.7
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.5e-100 369.0 249 72.7
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 3.5e-100 369.0 252 71.4
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 4.6e-100 368.6 250 72.8
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 7.8e-100 367.9 250 72.8
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.0e-99 367.5 247 72.1
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 1.7e-99 366.7 248 72.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 2.3e-99 366.3 245 74.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.0e-99 365.9 245 73.9
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 3.9e-99 365.5 251 72.1
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 6.6e-99 364.8 245 73.5
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 6.6e-99 364.8 245 73.5
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 8.6e-99 364.4 245 73.1
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 1.1e-98 364.0 249 72.3
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 3.3e-98 362.5 274 66.4
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 7.3e-98 361.3 264 69.7
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 9.5e-98 360.9 252 71.0
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.2e-97 360.5 251 70.9
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 2.1e-97 359.8 278 66.5
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 8.1e-97 357.8 248 71.0
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.1e-96 357.5 212 80.2
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 1.4e-96 357.1 246 72.4
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.4e-96 357.1 249 70.3
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 3.1e-96 355.9 251 70.5
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 4.0e-96 355.5 251 72.1
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 8.9e-96 354.4 250 69.2
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.6e-95 352.8 269 67.3
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 4.4e-95 352.1 252 69.8
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 9.8e-95 350.9 245 68.6
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 3.7e-94 349.0 260 66.5
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.4e-94 348.2 250 70.0
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 1.9e-93 346.7 241 70.5
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 1.9e-93 346.7 280 64.3
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.4e-93 346.3 247 67.6
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.4e-93 346.3 254 66.5
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 3.2e-93 345.9 270 64.1
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.2e-93 345.9 241 70.5
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 4.1e-93 345.5 263 65.4
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 4.1e-93 345.5 252 69.0
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 5.4e-93 345.1 251 66.1
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 9.2e-93 344.4 248 66.9
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 9.2e-93 344.4 248 67.3
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 1.6e-92 343.6 260 64.2
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.6e-92 343.6 285 60.7
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.6e-92 343.6 243 67.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.6e-92 343.6 250 68.4
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.6e-92 343.6 239 71.5
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.7e-92 342.8 247 67.2
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 2.7e-92 342.8 249 65.9
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 7.8e-92 341.3 247 66.8
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.8e-92 341.3 244 68.4
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.0e-91 340.9 249 65.5
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.0e-91 340.9 249 65.5
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 3.0e-91 339.3 239 71.1
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.9e-91 339.0 268 63.1
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 5.1e-91 338.6 267 64.0
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 6.6e-91 338.2 239 68.2
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.1e-90 337.4 249 65.1
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 1.1e-90 337.4 260 63.1
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 7.3e-90 334.7 245 66.5
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 7.3e-90 334.7 245 66.5
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 7.3e-90 334.7 245 66.5
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 1.2e-89 334.0 267 62.2
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.6e-89 333.6 246 68.3
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 2.8e-89 332.8 245 66.9
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.8e-89 332.8 258 63.6
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.7e-89 332.0 206 78.2
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 4.7e-89 332.0 249 64.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.4e-88 330.5 251 65.7
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.8e-88 330.1 240 65.0
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 6.8e-88 328.2 209 74.6
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 8.9e-88 327.8 251 65.3
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.2e-87 327.4 246 65.9
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.2e-87 327.4 246 65.9
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.2e-87 327.4 345 53.9
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.5e-87 327.0 241 67.2
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 3.4e-87 325.9 243 66.3
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.7e-86 323.6 246 65.0
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.1e-85 318.9 273 62.3
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 1.2e-84 317.4 186 80.1
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 2.7e-84 316.2 250 60.4
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 3.5e-84 315.8 236 65.3
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 1.3e-83 313.9 216 71.8
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 2.3e-83 313.2 306 56.9
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 5.1e-83 312.0 243 65.4
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 5.1e-83 312.0 256 62.1
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 6.6e-83 311.6 277 58.5
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 8.6e-83 311.2 248 63.3
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.9e-82 310.1 258 60.9
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 5.6e-82 308.5 251 63.3
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 1.2e-81 307.4 284 60.6
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.1e-81 306.6 254 63.0
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 2.8e-81 306.2 250 63.6
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.4e-80 303.9 251 62.9
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 3.1e-80 302.8 209 71.3
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 2.2e-78 296.6 238 61.8
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 3.8e-78 295.8 249 58.6
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 8.4e-78 294.7 204 69.6
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.2e-77 292.7 185 73.5
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.2e-76 290.8 170 80.0
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 3.0e-75 286.2 185 73.0
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.1e-75 285.4 263 54.4
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.1e-74 284.3 178 73.6
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.1e-69 267.7 251 54.6
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.2e-68 264.2 248 54.8
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.7e-67 258.5 288 52.4
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.1e-64 251.1 174 71.8
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.2e-62 243.4 236 51.7
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.9e-59 232.6 129 78.3
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 4.3e-50 202.6 236 47.5
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.7e-50 201.4 114 82.5
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.2e-47 194.5 142 69.7
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 3.0e-43 179.9 110 76.4
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.0e-43 179.9 107 76.6
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 4.3e-42 176.0 221 46.2
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 1.1e-40 171.4 253 37.9
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.2e-38 163.7 243 39.9
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 4.2e-37 159.5 95 86.3
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.2e-36 157.9 194 43.8
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 1.8e-32 144.1 99 71.7
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.5e-31 141.0 75 81.3
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.4e-29 134.4 100 60.0
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 5.9e-23 112.5 75 69.3
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 4.2e-21 106.3 74 66.2
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 8.8e-19 98.6 92 52.2
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 1.9e-13 80.9 198 30.3
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.5e-13 80.5 56 64.3
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.4e-13 78.6 154 32.5
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 8.8e-11 72.0 164 29.9
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 5.7e-10 69.3 62 61.3
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 2.2e-09 67.4 37 75.7
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 4.8e-09 66.2 64 56.2
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 8.3e-09 65.5 67 53.7
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.4e-08 64.7 82 45.1
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.8e-08 64.3 188 30.3
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.1e-08 63.5 69 53.6
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.1e-08 63.2 62 54.8
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 2.0e-07 60.8 66 50.0
C01p04760 Brassica napus HOM05D001201 ORTHO05D001100 2.3e-06 57.4 175 26.3
BolC1t00460H Brassica oleracea HOM05D001201 ORTHO05D001100 2.3e-06 57.4 175 26.3
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 2.3e-06 57.4 198 24.7
BcaNung06824 Brassica carinata HOM05D001201 ORTHO05D001100 6.5e-06 55.8 175 26.9
A01p04360 Brassica napus HOM05D001201 ORTHO05D001100 8.6e-06 55.5 175 25.7
BraA01t00425Z Brassica rapa HOM05D001201 ORTHO05D001100 8.6e-06 55.5 175 25.7


User provided reference genes

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