Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G172800 Glycine max HOM05D003203 ORTHO05D003526 2.7e-86 322.0 165 100.0
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 3.0e-45 185.7 165 66.7
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 1.6e-38 163.3 166 59.6
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 4.6e-38 161.8 160 60.0
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 7.3e-28 127.9 183 49.2
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 3.6e-27 125.6 172 48.8
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 4.0e-26 122.1 183 50.3
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 3.4e-25 119.0 166 49.4
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 3.4e-25 119.0 166 49.4
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 4.9e-24 115.2 167 49.1
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.4e-23 113.6 156 46.2
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 4.2e-23 112.1 175 44.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 3.5e-22 109.0 172 46.5
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.0e-21 107.5 164 42.1
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.3e-21 107.1 178 42.7
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.8e-21 106.7 188 41.0
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 2.3e-21 106.3 174 43.1
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.3e-21 106.3 174 43.1
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.5e-20 102.8 178 42.1
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.3e-20 102.4 185 40.0
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 9.6e-20 100.9 187 42.8
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 1.3e-19 100.5 177 40.7
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.6e-19 100.1 171 45.0
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.6e-19 100.1 171 45.0
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.6e-19 100.1 182 40.1
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 2.8e-19 99.4 173 39.3
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.8e-19 98.6 175 41.1
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 4.8e-19 98.6 174 40.2
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 6.2e-19 98.2 174 41.4
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 8.1e-19 97.8 188 41.0
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 8.1e-19 97.8 157 42.7
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.1e-18 97.4 176 39.8
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.1e-18 97.4 164 43.3
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 2.4e-18 96.3 176 39.8
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 4.0e-18 95.5 178 38.8
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 4.0e-18 95.5 172 40.7
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 6.9e-18 94.7 179 39.7
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 9.0e-18 94.4 169 39.6
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.2e-17 94.0 168 39.9
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.2e-17 94.0 174 37.4
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 1.2e-17 94.0 183 37.2
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.2e-17 94.0 183 39.9
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.5e-17 93.6 180 39.4
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 2.6e-17 92.8 180 37.2
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.6e-17 92.8 177 37.3
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 2.6e-17 92.8 184 39.7
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 5.8e-17 91.7 138 42.8
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 7.6e-17 91.3 174 38.5
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 7.6e-17 91.3 169 37.9
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.3e-16 90.5 177 37.9
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 1.3e-16 90.5 145 44.1
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.3e-16 90.5 132 40.9
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.9e-16 88.6 157 40.1
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 6.4e-16 88.2 184 37.5
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 6.4e-16 88.2 187 36.4
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 6.4e-16 88.2 155 40.0
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.4e-16 87.8 174 35.6
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 8.4e-16 87.8 156 38.5
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 8.4e-16 87.8 156 38.5
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 8.4e-16 87.8 156 40.4
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.4e-15 87.0 174 39.7
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 1.4e-15 87.0 154 40.9
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.9e-15 86.7 174 36.8
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 1.9e-15 86.7 190 35.8
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 2.4e-15 86.3 186 34.9
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 4.2e-15 85.5 156 37.8
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 5.5e-15 85.1 207 34.8
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 9.3e-15 84.3 181 35.9
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 9.3e-15 84.3 188 35.6
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.2e-14 84.0 182 37.4
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 2.1e-14 83.2 156 38.5
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 3.5e-14 82.4 184 35.9
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 3.5e-14 82.4 131 40.5
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.3e-13 80.5 169 35.5
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.8e-13 80.1 140 42.1
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 3.9e-13 79.0 151 41.7
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 6.7e-13 78.2 172 36.0
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 8.7e-13 77.8 156 35.9
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 8.7e-13 77.8 143 39.9
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 1.9e-12 76.6 136 36.8
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 7.4e-12 74.7 110 40.0
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.3e-11 73.9 168 35.7
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 1.3e-11 73.9 95 46.3
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.6e-11 73.6 125 45.6
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 2.8e-11 72.8 145 39.3
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 3.7e-11 72.4 171 35.1
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 4.8e-11 72.0 92 46.7
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 6.2e-11 71.6 161 34.8
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 6.2e-11 71.6 161 34.8
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 6.2e-11 71.6 161 34.8
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 8.1e-11 71.2 179 30.2
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 8.1e-11 71.2 182 36.3
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 1.1e-10 70.9 157 33.1
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 1.4e-10 70.5 199 32.7
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 1.8e-10 70.1 155 34.8
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 1.8e-10 70.1 155 34.8
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 2.4e-10 69.7 153 35.9
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.4e-10 69.7 125 44.0
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 3.1e-10 69.3 153 35.9
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 4.0e-10 68.9 139 36.7
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 9.0e-10 67.8 153 34.6
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 9.0e-10 67.8 153 34.6
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.5e-09 67.0 189 31.7
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 2.0e-09 66.6 177 36.7
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 2.6e-09 66.2 82 47.6
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 3.4e-09 65.9 143 32.9
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.0e-08 64.3 73 49.3
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 1.3e-08 63.9 152 31.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.7e-08 63.5 155 33.5
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 8.4e-08 61.2 155 32.9
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.4e-07 60.5 97 38.1
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.4e-07 60.5 120 38.3
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 3.2e-07 59.3 70 44.3
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 4.2e-07 58.9 144 31.9
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 5.5e-07 58.5 87 43.7
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 7.1e-07 58.2 70 42.9
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 9.3e-07 57.8 129 32.6
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 1.2e-06 57.4 138 34.1
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 2.1e-06 56.6 179 31.8
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 2.7e-06 56.2 94 37.2
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 2.7e-06 56.2 88 44.3
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 2.7e-06 56.2 86 41.9
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 7.9e-06 54.7 69 43.5


User provided reference genes

Program Settings