Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 4.2e-113 411.4 207 100.0
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 3.9e-95 351.7 207 87.9
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 3.1e-92 342.0 206 86.4
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 1.5e-86 323.2 209 82.3
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 6.9e-84 314.3 207 81.2
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 6.5e-82 307.8 207 78.3
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 6.5e-82 307.8 207 78.3
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 2.5e-81 305.8 209 79.4
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 3.9e-79 298.5 211 76.3
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 8.2e-77 290.8 212 76.4
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 6.1e-72 274.6 208 70.2
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.8e-71 273.1 210 71.0
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 2.3e-71 272.7 210 72.9
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 6.7e-71 271.2 208 69.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.7e-69 265.4 235 66.8
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 6.3e-69 264.6 179 77.1
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 8.2e-69 264.2 207 71.0
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 5.3e-68 261.5 211 70.1
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 4.5e-67 258.5 208 67.8
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.7e-66 256.5 209 70.3
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.8e-66 255.4 206 67.0
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.0e-66 255.0 209 66.5
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.2e-65 252.3 210 69.0
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 4.2e-65 251.9 239 60.7
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 7.2e-65 251.1 209 67.5
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 9.4e-65 250.8 210 69.0
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.6e-64 248.8 208 66.8
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.3e-63 246.1 210 65.2
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.2e-63 245.0 198 66.7
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 2.6e-62 242.7 195 72.3
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 3.3e-62 242.3 209 66.0
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.3e-61 240.4 237 60.8
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.7e-61 240.0 210 66.2
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 1.1e-60 237.3 210 64.3
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 1.8e-60 236.5 220 63.6
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.8e-60 236.5 210 66.2
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 3.1e-60 235.7 210 62.4
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 5.3e-60 235.0 215 66.0
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 1.7e-58 229.9 181 69.6
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 2.9e-58 229.2 225 60.0
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 2.9e-58 229.2 208 65.9
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.5e-57 226.1 204 65.7
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 4.2e-57 225.3 210 62.9
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.6e-56 223.4 202 63.9
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 2.7e-56 222.6 206 63.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 8.0e-56 221.1 206 62.6
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.8e-55 219.9 192 67.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.3e-55 219.5 210 61.4
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.0e-55 218.8 210 61.0
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 1.2e-54 217.2 209 61.7
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 2.6e-54 216.1 209 63.2
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.7e-54 214.9 209 59.8
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.7e-54 214.9 209 59.8
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.7e-53 213.4 211 64.0
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 8.3e-53 211.1 208 58.7
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 8.3e-53 211.1 207 58.0
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.4e-52 210.3 210 62.9
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.4e-52 209.5 212 59.0
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 4.1e-52 208.8 209 60.3
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 7.0e-52 208.0 209 58.9
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.0e-50 204.1 213 61.0
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 1.0e-50 204.1 214 57.9
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.3e-50 203.8 208 61.5
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.7e-50 203.4 210 60.0
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 2.3e-50 203.0 182 65.9
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.2e-48 197.2 198 60.1
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.2e-48 197.2 207 56.5
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.6e-48 196.8 215 60.0
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 8.0e-48 194.5 208 56.7
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 1.0e-47 194.1 221 55.7
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.4e-47 193.7 208 56.2
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 1.2e-46 190.7 211 54.5
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 1.2e-46 190.7 210 56.2
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 2.0e-46 189.9 160 65.0
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 5.7e-46 188.3 225 55.1
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 5.7e-46 188.3 207 55.1
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.7e-46 188.3 208 54.8
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.7e-45 186.8 208 58.2
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 2.2e-45 186.4 231 53.7
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 6.3e-45 184.9 124 78.2
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.1e-44 184.1 208 56.7
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 5.4e-44 181.8 274 46.4
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 1.2e-43 180.6 211 53.6
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.2e-43 180.6 216 56.5
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.7e-43 179.5 192 57.3
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.7e-43 179.5 207 55.1
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 7.8e-43 177.9 217 56.2
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.9e-42 176.0 209 54.1
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 3.8e-42 175.6 211 55.0
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 8.6e-42 174.5 192 56.2
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 1.1e-41 174.1 205 56.6
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 7.3e-41 171.4 140 67.9
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.7e-40 168.7 263 46.8
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.0e-39 167.5 219 50.7
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 1.8e-39 166.8 193 52.3
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.8e-39 166.8 210 55.7
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 2.3e-39 166.4 207 53.1
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 6.8e-39 164.9 216 52.8
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 6.8e-39 164.9 196 55.1
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 6.8e-39 164.9 214 50.9
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 8.9e-39 164.5 142 63.4
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.2e-38 164.1 144 66.0
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.5e-38 163.7 194 51.5
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.0e-38 163.3 158 61.4
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.0e-38 163.3 158 61.4
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 3.4e-38 162.5 125 70.4
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 3.4e-38 162.5 125 70.4
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.4e-38 162.5 121 73.6
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.4e-38 162.5 121 73.6
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 4.4e-38 162.2 226 48.2
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 1.7e-37 160.2 212 53.8
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 4.9e-37 158.7 115 70.4
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.1e-36 157.5 115 69.6
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.1e-36 157.5 234 50.0
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 1.4e-36 157.1 209 50.7
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 1.4e-36 157.1 224 47.8
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 2.4e-36 156.4 161 59.0
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 5.4e-36 155.2 123 66.7
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 1.2e-35 154.1 209 51.7
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.6e-35 153.7 127 69.3
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 3.5e-35 152.5 207 50.2
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.5e-35 152.5 202 50.5
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 7.8e-35 151.4 171 57.3
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.7e-34 150.2 209 49.3
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.7e-34 150.2 209 49.3
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 1.7e-34 150.2 209 49.8
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 3.0e-34 149.4 172 52.9
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.0e-34 149.4 204 52.0
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.9e-34 149.1 211 46.4
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 6.6e-34 148.3 97 73.2
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.1e-33 147.5 225 46.2
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 1.9e-33 146.7 222 49.1
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 3.3e-33 146.0 121 66.1
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 3.3e-33 146.0 121 66.1
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 5.6e-33 145.2 211 53.1
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 7.3e-33 144.8 153 56.9
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 7.3e-33 144.8 244 42.6
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.2e-32 144.1 204 52.0
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.2e-32 144.1 204 52.0
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 2.1e-32 143.3 197 49.2
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 4.7e-32 142.1 239 47.7
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.7e-32 142.1 204 50.5
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 6.2e-32 141.7 213 45.5
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 6.2e-32 141.7 198 50.0
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.1e-31 141.0 173 52.6
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.4e-31 140.6 207 49.8
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 1.4e-31 140.6 164 56.1
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.8e-31 140.2 110 69.1
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 3.4e-30 136.0 100 70.0
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 3.4e-30 136.0 100 70.0
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 4.4e-30 135.6 242 45.0
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 5.8e-30 135.2 195 48.2
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 7.5e-30 134.8 129 61.2
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.9e-29 132.9 129 61.2
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 2.9e-29 132.9 197 47.7
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 1.4e-28 130.6 197 47.2
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 1.9e-28 130.2 177 50.8
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 2.4e-28 129.8 106 65.1
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 2.4e-28 129.8 100 71.0
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 2.4e-28 129.8 100 71.0
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 3.2e-28 129.4 170 56.5
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 7.8e-27 124.8 209 45.5
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.3e-26 123.2 132 58.3
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 3.9e-26 122.5 208 45.2
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 6.6e-26 121.7 209 44.0
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 9.5e-25 117.9 74 77.0
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 2.1e-24 116.7 140 55.0
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.8e-24 116.3 187 44.4
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 8.1e-24 114.8 62 87.1
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 2.3e-23 113.2 79 77.2
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.3e-23 113.2 56 94.6
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 6.8e-23 111.7 231 39.4
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.6e-22 109.8 190 43.2
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.9e-20 103.6 137 47.4
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 7.8e-19 98.2 128 52.3
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 3.0e-18 96.3 111 57.7
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 5.8e-14 82.0 41 82.9
CSS0028767 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.4e-12 76.6 86 55.8
CSS0035418 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.4e-12 76.6 86 55.8
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 2.4e-12 76.6 66 63.6
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 2.1e-08 63.5 183 38.8
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 2.1e-08 63.5 184 40.8
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 6.2e-08 62.0 41 65.9
Aa31LG5G2650 Aethionema arabicum HOM05D003686 ORTHO05D004322 1.8e-07 60.5 120 43.3
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 7.6e-06 55.1 81 48.1


User provided reference genes

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