Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.0e-268 928.7 537 100.0
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 9.1e-229 797.0 542 84.1
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.7e-228 795.4 542 84.1
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 6.6e-219 764.2 542 80.4
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.7e-214 749.6 540 81.5
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 4.1e-205 718.4 541 78.6
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.2e-204 716.8 544 76.5
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-204 716.1 543 78.8
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 3.9e-195 685.3 567 74.4
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 4.0e-192 675.2 544 75.0
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-191 673.7 555 76.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.9e-190 669.1 543 74.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 3.2e-189 665.6 545 73.4
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 9.3e-189 664.1 556 76.1
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 9.6e-186 654.1 544 73.7
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.3e-185 653.7 541 75.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.1e-184 649.0 546 71.4
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.8e-183 644.8 546 71.6
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 4.2e-181 638.6 548 69.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 9.3e-181 637.5 540 70.9
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.2e-180 637.1 546 70.9
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.9e-179 632.1 546 71.1
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.1e-179 631.7 545 72.8
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 8.7e-179 630.9 548 69.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.5e-178 629.4 546 66.8
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 4.3e-178 628.6 540 70.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.6e-177 626.7 555 73.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 9.0e-176 620.9 546 70.7
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 9.9e-175 617.5 542 68.5
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.1e-173 614.0 555 71.4
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 4.2e-173 612.1 542 67.2
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 3.0e-171 605.9 550 66.5
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 3.9e-171 605.5 551 68.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.1e-171 605.1 543 69.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.5e-170 603.6 541 69.3
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.5e-170 602.8 527 68.3
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 9.0e-168 594.3 545 67.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.5e-167 593.6 543 68.0
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.6e-167 592.8 547 70.9
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-166 589.7 545 66.8
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 8.4e-166 587.8 536 70.1
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.1e-164 583.2 547 67.6
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.7e-164 582.8 547 69.7
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.7e-164 582.8 587 63.4
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.7e-164 582.8 587 63.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.0e-163 580.9 549 65.9
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 6.7e-163 578.2 560 65.0
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 6.7e-163 578.2 552 66.5
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 5.7e-162 575.1 551 68.8
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 9.6e-162 574.3 541 67.5
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 9.0e-160 567.8 543 68.0
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.0e-159 566.6 544 64.9
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.0e-158 564.3 557 65.0
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.7e-158 563.5 553 69.3
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.2e-158 563.1 553 69.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.2e-158 563.1 501 68.3
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.9e-157 560.1 499 67.7
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 2.5e-157 559.7 501 67.9
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 3.2e-157 559.3 552 63.4
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.5e-156 555.8 552 68.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.8e-155 553.5 555 67.2
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 5.7e-154 548.5 544 60.8
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-153 547.4 537 61.5
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-152 543.9 559 61.7
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.1e-152 542.7 554 63.7
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.2e-151 540.8 580 61.2
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.0e-151 540.0 564 62.8
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.0e-150 537.7 554 61.7
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 6.5e-150 535.0 359 79.9
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 8.5e-150 534.6 553 62.2
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 3.6e-148 529.3 554 61.7
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.8e-147 526.9 527 63.9
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.0e-147 526.2 551 59.3
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.1e-146 524.2 551 62.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.1e-144 516.2 545 62.8
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 9.1e-144 514.6 484 66.1
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.4e-143 512.7 551 55.9
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 3.4e-143 512.7 585 56.9
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 7.7e-143 511.5 515 64.1
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 8.5e-142 508.1 468 69.9
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.4e-141 507.3 524 63.9
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.5e-141 506.5 578 56.9
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.2e-140 504.2 548 63.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 2.1e-140 503.4 550 64.2
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 2.1e-140 503.4 550 64.2
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.7e-140 503.1 591 55.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 4.7e-140 502.3 544 61.8
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 4.7e-140 502.3 534 59.0
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 5.1e-139 498.8 548 63.9
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.1e-138 497.7 544 59.4
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.1e-138 497.7 546 60.6
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.5e-138 497.3 516 62.0
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.6e-138 496.5 549 63.4
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.7e-137 493.8 559 56.5
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-137 493.8 585 54.9
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.7e-137 493.8 515 60.8
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.8e-137 493.0 541 62.1
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.3e-136 488.8 549 59.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 5.3e-136 488.8 554 55.2
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 9.1e-136 488.0 536 63.4
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 5.5e-133 478.8 559 57.2
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 9.4e-133 478.0 549 57.6
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 3.0e-131 473.0 559 57.2
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.5e-130 470.7 550 57.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 9.7e-130 468.0 465 66.7
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 8.2e-129 464.9 838 43.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 8.2e-129 464.9 552 57.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.0e-127 460.3 577 53.2
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.7e-126 457.2 496 63.1
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.7e-126 457.2 550 55.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.9e-125 453.8 557 57.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.2e-122 444.5 538 56.1
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.2e-122 444.5 484 59.3
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.6e-122 443.4 523 55.1
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.8e-115 418.3 577 49.9
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-114 417.9 536 58.0
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.2e-114 417.9 536 58.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.8e-113 413.3 547 54.8
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 3.7e-113 412.9 523 57.4
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.4e-112 411.0 548 55.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 2.4e-112 410.2 546 49.5
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.2e-108 397.9 549 52.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.0e-106 390.6 326 66.9
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.4e-106 389.8 552 51.1
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 7.5e-106 388.7 411 69.6
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.7e-103 380.2 565 47.8
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.0e-102 378.3 543 44.9
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-96 357.1 555 47.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 7.0e-96 355.5 552 47.5
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 9.2e-96 355.1 549 45.7
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.0e-94 350.1 366 67.5
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.9e-94 349.7 368 68.8
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.0e-94 349.4 555 47.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-93 347.8 544 48.2
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.5e-93 347.1 549 45.5
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.3e-93 346.7 544 48.0
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 9.5e-93 345.1 195 85.6
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.0e-91 339.7 430 52.3
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.2e-90 338.2 453 53.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 8.9e-83 312.0 374 51.6
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.5e-82 311.2 322 67.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.7e-70 271.2 308 58.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 8.1e-68 262.3 333 48.9
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 4.8e-60 236.5 367 54.2
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.9e-57 227.3 244 62.7
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.2e-56 223.4 350 53.1
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-53 214.9 510 38.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.5e-41 172.9 176 69.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-37 160.2 241 45.2
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.7e-36 157.1 165 59.4
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.4e-34 150.6 100 70.0
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.7e-29 133.3 102 81.4
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.4e-26 124.0 313 33.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.7e-25 121.7 267 40.8
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 9.4e-24 115.9 215 41.9
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.1e-23 113.2 208 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.2e-22 110.2 140 42.9
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.6e-21 107.8 111 62.2
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.7e-21 106.7 113 61.1
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 6.3e-20 103.2 69 82.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.3e-20 103.2 69 82.6
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 8.2e-20 102.8 51 90.2
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.2e-16 90.5 254 33.1
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-15 88.2 104 62.5
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 3.6e-15 87.4 171 40.9
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 8.0e-15 86.3 56 76.8
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 5.2e-14 83.6 55 69.1
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.2e-14 83.6 213 37.1
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.8e-12 77.8 118 48.3
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.8e-12 77.0 66 62.1
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.4e-11 74.7 59 59.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.2e-10 72.4 66 57.6
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.5e-10 70.9 67 58.2
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.8e-09 67.4 207 37.7
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 9.4e-08 62.8 64 50.0
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 8.0e-07 59.7 53 56.6
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.0e-06 57.8 122 32.0
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 5.2e-06 57.0 64 45.3


User provided reference genes

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