Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.1e-217 759.6 371 100.0
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.9e-188 662.5 371 87.3
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 3.2e-188 661.8 369 87.0
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 7.1e-188 660.6 374 88.2
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.6e-187 659.4 368 87.5
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 7.8e-187 657.1 365 87.9
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.7e-186 656.0 369 86.2
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.9e-185 652.5 371 87.6
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.9e-185 652.5 371 86.3
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 3.3e-185 651.7 373 86.6
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 6.2e-184 647.5 363 87.3
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.4e-183 645.6 368 85.6
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 3.1e-183 645.2 369 86.2
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 4.0e-183 644.8 369 84.8
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.8e-183 644.0 369 84.8
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 6.8e-183 644.0 369 84.8
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 6.8e-183 644.0 368 85.9
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 8.9e-183 643.7 375 85.6
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.5e-182 642.9 365 85.8
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 2.6e-182 642.1 415 79.0
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 9.9e-182 640.2 356 87.6
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 2.2e-181 639.0 371 84.4
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 3.8e-181 638.3 371 84.4
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.4e-180 636.3 407 79.4
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 1.4e-180 636.3 367 84.7
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.4e-180 635.6 373 83.4
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 4.2e-180 634.8 372 84.1
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 6.0e-179 630.9 365 83.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.3e-178 629.0 373 83.1
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 5.1e-178 627.9 368 82.6
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 6.6e-178 627.5 386 80.8
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 5.6e-177 624.4 356 85.1
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 5.6e-177 624.4 372 82.0
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 3.6e-176 621.7 374 80.5
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 3.6e-176 621.7 341 88.3
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 3.6e-176 621.7 374 82.6
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.8e-176 621.3 372 82.5
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 4.8e-176 621.3 356 84.8
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 8.1e-176 620.5 345 89.0
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 8.1e-176 620.5 373 82.3
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.1e-175 620.2 365 83.6
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 1.8e-175 619.4 372 81.5
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.8e-175 619.4 369 81.8
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.1e-175 618.6 369 82.1
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.1e-175 618.6 365 83.3
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 9.0e-175 617.1 369 82.1
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 1.2e-174 616.7 356 85.4
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 1.5e-174 616.3 382 79.1
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.5e-174 616.3 370 81.9
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 2.6e-174 615.5 372 81.5
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.4e-174 614.8 372 80.4
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 1.9e-172 609.4 394 76.6
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 3.5e-171 605.1 368 80.7
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 3.9e-170 601.7 334 87.4
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 5.1e-170 601.3 374 78.6
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 8.7e-170 600.5 372 81.5
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-169 599.7 364 79.9
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-169 599.7 364 79.9
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.5e-169 599.7 385 79.5
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 5.6e-169 597.8 389 76.6
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 9.6e-169 597.0 377 79.3
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.3e-168 596.7 372 79.0
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.4e-167 592.4 358 81.8
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 4.0e-167 591.7 370 78.9
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 4.0e-167 591.7 356 80.9
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 4.0e-167 591.7 367 79.3
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 4.0e-167 591.7 370 80.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.1e-164 583.6 397 75.1
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 3.2e-164 582.0 361 80.3
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 3.2e-164 582.0 372 77.2
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 5.5e-164 581.3 373 76.1
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 2.7e-163 578.9 374 76.5
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 1.3e-162 576.6 374 75.9
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 3.0e-162 575.5 356 79.8
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 8.7e-162 573.9 356 80.3
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 4.8e-160 568.2 373 76.7
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 7.6e-158 560.8 459 65.4
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 3.2e-156 555.4 326 82.2
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.6e-155 553.1 334 82.0
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 4.6e-155 551.6 340 79.4
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 6.0e-155 551.2 375 74.4
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.3e-154 549.3 345 80.6
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 9.0e-151 537.3 349 72.5
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 2.6e-150 535.8 335 75.8
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 3.4e-150 535.4 356 72.5
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 3.8e-149 531.9 369 73.2
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.9e-148 529.6 387 69.3
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.5e-148 529.3 373 72.7
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.2e-147 526.9 369 74.0
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.0e-146 523.9 381 71.1
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 2.6e-142 509.2 374 70.6
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.2e-139 500.4 356 71.6
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 2.7e-139 499.2 370 68.4
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 7.4e-137 491.1 375 68.5
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 7.4e-137 491.1 331 69.2
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 3.4e-134 482.3 336 69.0
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 1.7e-125 453.4 273 79.9
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.7e-125 453.4 367 64.3
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.7e-125 453.4 301 74.8
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 6.7e-122 441.4 230 91.7
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 6.3e-120 434.9 219 95.0
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.4e-119 433.7 340 65.3
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 3.1e-119 432.6 338 60.7
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 1.7e-117 426.8 230 89.1
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 1.7e-117 426.8 230 89.1
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.9e-117 426.0 374 62.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.5e-116 423.7 252 81.7
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 7.2e-116 421.4 338 61.2
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 3.6e-115 419.1 231 87.9
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.8e-114 416.8 336 65.2
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 8.3e-112 407.9 214 90.2
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.4e-111 406.4 253 80.2
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.7e-109 400.2 356 61.2
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.7e-109 400.2 234 85.5
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 8.5e-109 397.9 229 85.2
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.0e-97 360.1 437 45.8
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 4.3e-84 315.8 220 72.3
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 2.8e-67 260.0 209 65.6
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-61 240.7 371 41.2
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 9.6e-60 235.0 225 58.2
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.2e-56 223.8 131 81.7
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 1.6e-54 217.6 283 46.3
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 2.4e-50 203.8 114 83.3
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 1.2e-49 201.4 117 81.2
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 4.2e-47 193.0 122 75.4
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 4.9e-40 169.5 94 83.0
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 4.6e-38 162.9 101 76.2
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 3.9e-37 159.8 83 90.4
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.0e-32 145.2 121 65.3
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 6.7e-29 132.5 77 87.0
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 8.2e-27 125.6 95 67.4
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.8e-24 116.7 74 75.7
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 9.4e-23 112.1 70 74.3
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 5.1e-21 106.3 75 69.3
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.8e-18 97.8 54 81.5
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.0e-16 92.0 60 73.3
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 2.8e-11 73.9 77 51.9
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 3.7e-11 73.6 54 68.5
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 4.8e-11 73.2 75 53.3
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 2.0e-09 67.8 31 93.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.0e-09 67.8 34 79.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 7.7e-09 65.9 44 70.5
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 6.1e-06 56.2 38 68.4
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 6.1e-06 56.2 38 68.4


User provided reference genes

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