Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.0e-257 891.3 458 100.0
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 7.3e-251 870.2 458 98.3
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 3.3e-110 402.9 553 47.6
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.2e-109 401.0 555 47.6
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.6e-109 400.6 547 47.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.4e-107 392.5 551 46.8
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.3e-106 391.0 551 47.2
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.4e-106 388.7 564 47.0
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 8.4e-106 388.3 559 47.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.2e-105 386.3 553 45.8
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.2e-104 384.4 556 46.8
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.6e-104 384.0 550 46.4
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 7.8e-104 381.7 552 46.4
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 1.5e-102 377.5 549 46.6
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 5.6e-102 375.6 550 45.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 5.6e-102 375.6 547 46.3
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 5.6e-102 375.6 548 46.0
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 9.6e-102 374.8 536 47.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.6e-101 374.0 549 46.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.6e-101 374.0 547 45.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.6e-101 374.0 554 45.5
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-101 372.9 550 46.0
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.6e-101 372.9 584 45.2
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.2e-101 372.1 554 44.9
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.1e-101 371.7 551 46.6
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.4e-100 370.9 553 45.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.0e-100 369.4 577 45.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 2.0e-99 367.1 562 45.0
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.4e-99 366.3 549 45.7
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.4e-99 366.3 541 46.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 7.6e-99 365.2 536 46.5
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 9.9e-99 364.8 559 45.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 9.9e-99 364.8 559 44.4
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.7e-98 364.0 548 45.3
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 6.4e-98 362.1 553 44.5
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 8.4e-98 361.7 556 45.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 5.4e-97 359.0 547 45.3
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.1e-96 357.1 547 44.2
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-96 356.7 565 42.3
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 7.8e-96 355.1 550 43.3
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.3e-95 354.4 560 47.0
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.1e-95 352.4 598 43.3
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.1e-95 352.4 598 43.3
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.6e-95 352.1 562 43.6
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.1e-94 351.3 556 43.3
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.5e-94 350.9 553 44.1
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.3e-94 349.7 551 44.5
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.1e-93 347.1 562 43.1
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.1e-93 347.1 562 43.4
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 2.1e-93 347.1 549 43.9
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 4.8e-93 345.9 566 43.5
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 4.8e-93 345.9 552 43.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 5.3e-92 342.4 560 43.6
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 9.0e-92 341.7 551 43.7
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.2e-91 341.3 554 43.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.6e-91 340.1 557 42.5
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.4e-91 339.7 531 45.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.5e-91 339.3 563 43.2
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.6e-91 338.6 516 45.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.3e-90 337.8 542 44.5
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.2e-90 337.0 544 42.5
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 2.2e-90 337.0 587 42.1
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 4.9e-90 335.9 555 42.0
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.1e-89 334.7 526 45.4
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-89 334.3 568 41.2
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.2e-89 333.2 555 42.5
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 2.1e-88 330.5 554 43.5
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.1e-88 330.5 560 42.3
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.1e-88 330.5 576 41.8
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.7e-88 330.1 560 42.5
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 7.9e-88 328.6 365 52.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 7.9e-88 328.6 551 42.1
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.9e-88 328.6 540 42.0
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.9e-87 326.2 552 40.6
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 5.6e-86 322.4 500 45.8
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 9.6e-86 321.6 512 43.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 9.6e-86 321.6 545 43.1
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.3e-85 321.2 551 43.7
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.6e-85 320.9 520 44.2
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.7e-85 319.7 485 45.8
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.8e-84 317.4 557 40.6
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.8e-84 317.4 516 44.2
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.4e-84 317.0 484 45.7
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 4.0e-84 316.2 547 41.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.3e-84 315.8 569 39.9
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 6.9e-84 315.5 570 40.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 6.9e-84 315.5 539 42.3
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.6e-83 313.5 559 40.6
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 4.5e-83 312.8 553 41.2
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 4.5e-83 312.8 516 41.5
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.8e-83 312.4 555 42.3
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 7.6e-83 312.0 555 41.1
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 7.6e-83 312.0 555 41.1
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.6e-83 312.0 498 43.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.3e-82 311.2 548 41.4
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-82 310.5 498 43.6
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.9e-82 310.1 535 42.8
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 8.4e-82 308.5 524 42.7
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-81 308.1 553 40.9
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.4e-81 307.8 554 40.8
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.4e-81 307.8 505 45.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 4.2e-81 306.2 554 40.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.2e-81 306.2 485 44.9
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 9.3e-81 305.1 560 40.5
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.6e-80 304.3 533 42.0
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 4.6e-80 302.8 538 42.8
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.1e-78 298.1 513 41.5
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.5e-78 297.0 514 42.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.6e-78 295.8 530 41.5
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-77 294.3 565 38.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 4.8e-77 292.7 523 41.7
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.1e-76 291.6 496 41.7
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.8e-76 290.8 546 38.3
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 9.0e-76 288.5 554 39.5
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.2e-75 288.1 341 50.7
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.5e-75 286.2 501 40.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.5e-74 282.3 540 39.4
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 8.4e-74 282.0 533 40.2
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 4.6e-72 276.2 488 42.8
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.8e-71 274.2 523 40.3
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.8e-71 274.2 523 40.3
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 8.7e-71 271.9 533 38.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.7e-70 268.5 324 49.4
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.3e-69 265.8 554 36.5
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.1e-68 265.0 564 37.2
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 6.9e-68 262.3 496 40.1
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 9.0e-68 261.9 555 38.4
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 3.8e-66 256.5 470 42.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 5.0e-66 256.1 563 35.9
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.9e-65 254.2 549 37.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.1e-62 245.0 246 61.8
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 2.0e-59 234.2 507 37.7
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.1e-56 224.2 201 57.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.8e-55 221.1 523 35.8
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.6e-54 217.2 481 38.5
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.0e-50 205.3 435 37.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 7.2e-49 199.1 410 40.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 9.4e-49 198.7 376 35.6
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.4e-47 194.9 408 39.7
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.1e-44 182.2 308 38.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-43 181.8 431 36.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.2e-43 181.8 272 44.1
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.8e-42 176.8 368 39.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.4e-39 168.3 202 54.5
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.7e-37 161.4 309 43.4
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.2e-32 145.2 366 38.3
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.8e-29 134.0 367 35.7
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.4e-28 131.7 97 58.8
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.2e-22 112.1 274 38.7
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-19 102.1 236 32.6
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.0e-15 89.0 68 55.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 6.8e-15 86.3 179 36.9
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 7.5e-14 82.8 168 38.1
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.9e-13 80.1 98 40.8
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 5.0e-10 70.1 477 25.4
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.9e-09 68.2 56 53.6
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.3e-09 67.0 92 52.2
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 5.6e-09 66.6 75 48.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.7e-08 63.5 195 32.3
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-06 58.9 181 36.5
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 2.0e-06 58.2 53 56.6
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 2.6e-06 57.8 74 40.5
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.6e-06 57.8 74 40.5
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.8e-06 56.6 106 39.6


User provided reference genes

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