Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.7e-294 1013.1 576 100.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-264 915.6 578 92.9
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 8.5e-257 890.2 577 91.0
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-227 793.1 577 83.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 2.7e-162 576.2 587 61.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.0e-161 574.3 588 61.9
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.1e-160 570.9 586 60.1
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.0e-160 570.1 584 61.8
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-159 567.4 583 60.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.1e-158 561.2 585 60.7
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.5e-156 555.1 589 59.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 5.1e-153 545.4 597 59.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.7e-153 545.0 587 59.5
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.3e-151 540.8 586 56.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.1e-150 536.2 587 59.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.3e-150 535.4 584 59.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.6e-149 533.1 588 61.4
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 8.5e-148 528.1 587 58.6
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 5.5e-147 525.4 588 58.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.5e-147 525.4 584 59.4
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.1e-146 523.5 587 58.4
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 1.4e-145 520.8 583 56.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 3.0e-145 519.6 592 58.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 6.7e-145 518.5 585 55.7
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-144 517.7 588 58.0
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 3.3e-144 516.2 592 60.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.3e-143 514.2 586 59.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.7e-143 513.8 597 58.1
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.8e-143 513.1 584 61.6
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.8e-143 512.3 584 59.9
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.8e-142 510.4 632 54.0
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.8e-142 510.4 632 54.0
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 3.1e-142 509.6 581 61.6
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.1e-142 509.6 587 60.5
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 7.0e-142 508.4 590 56.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 4.5e-141 505.8 586 57.8
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.3e-140 504.2 591 55.0
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 8.5e-140 501.5 589 56.7
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.2e-139 499.6 585 57.6
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.7e-138 496.5 584 55.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.0e-137 493.0 586 59.9
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 4.0e-137 492.7 589 57.2
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.2e-136 491.1 590 54.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.6e-136 490.0 579 52.5
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.4e-136 489.6 585 54.9
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 3.4e-136 489.6 588 60.5
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.3e-135 487.6 597 54.8
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.1e-134 484.6 583 54.2
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.5e-131 474.2 585 55.4
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 7.2e-131 471.9 539 56.0
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.0e-130 468.4 586 52.9
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-129 468.0 600 54.2
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.2e-129 465.7 574 53.3
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 5.7e-128 462.2 594 52.5
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 9.8e-128 461.5 585 56.2
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.7e-127 460.7 557 60.1
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.7e-127 460.7 584 51.4
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-127 460.3 601 53.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.8e-127 459.9 600 53.7
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.8e-127 459.9 611 52.0
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.7e-127 459.5 600 54.0
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 6.3e-127 458.8 586 54.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.1e-126 458.0 623 52.2
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.4e-126 457.6 591 54.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.4e-126 456.8 590 51.5
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 9.1e-126 454.9 556 55.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.6e-125 454.1 586 52.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.0e-125 453.8 588 53.2
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.7e-125 453.4 600 53.5
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.7e-124 450.7 626 51.9
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 8.6e-124 448.4 602 51.8
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.5e-123 447.6 585 57.1
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.9e-123 447.2 585 53.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.3e-123 446.4 592 53.4
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 9.5e-123 444.9 557 55.1
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.6e-122 443.0 592 53.4
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 3.0e-121 439.9 590 55.1
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 4.0e-121 439.5 591 54.5
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 5.2e-121 439.1 618 48.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 8.9e-121 438.3 589 51.8
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.0e-120 437.2 592 52.2
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.4e-120 436.0 599 49.2
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.7e-119 434.1 576 52.8
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.8e-118 430.6 590 52.5
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 5.4e-118 429.1 559 55.6
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 7.0e-118 428.7 596 54.5
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 4.5e-117 426.0 596 48.7
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.3e-116 424.5 587 53.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.3e-116 423.7 549 52.8
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 2.9e-116 423.3 549 53.2
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 6.6e-116 422.2 589 53.0
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 6.6e-116 422.2 589 53.0
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 6.6e-116 422.2 588 52.7
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 6.6e-116 422.2 579 51.8
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 6.6e-116 422.2 579 52.3
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.5e-115 421.0 402 59.7
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.9e-115 420.6 598 55.2
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 9.5e-115 418.3 587 52.8
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.6e-114 417.5 586 50.9
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 6.1e-114 415.6 584 50.9
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.1e-113 413.3 574 49.8
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 6.4e-111 405.6 532 51.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.7e-109 400.2 614 45.4
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.3e-108 397.9 570 51.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 3.9e-108 396.4 592 51.0
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 8.6e-108 395.2 583 46.3
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 8.6e-108 395.2 595 50.3
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.5e-107 394.4 592 50.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.3e-107 392.9 587 49.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.3e-107 392.9 587 48.9
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 7.3e-107 392.1 587 49.1
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.3e-107 392.1 579 49.7
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-106 390.6 579 49.6
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.8e-106 390.2 591 54.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 8.0e-106 388.7 574 49.3
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 4.0e-105 386.3 578 48.6
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 3.2e-102 376.7 880 36.6
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.3e-100 371.3 586 51.0
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-100 371.3 566 45.8
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.5e-99 367.9 510 55.3
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 3.3e-99 366.7 527 49.5
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.5e-96 357.8 576 46.0
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.5e-96 357.8 576 46.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.0e-96 357.5 584 45.2
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 8.3e-95 352.1 542 51.3
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 4.1e-94 349.7 584 44.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.1e-94 349.7 603 42.8
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.6e-93 347.8 508 53.5
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 3.0e-92 343.6 585 42.2
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 3.3e-91 340.1 593 42.5
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 2.9e-87 327.0 437 56.3
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-86 325.1 364 53.3
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 7.8e-85 318.9 594 39.6
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.6e-82 310.1 365 60.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 7.6e-80 302.4 451 50.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 5.6e-75 286.2 561 46.9
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 8.4e-71 272.3 458 45.9
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.1e-69 267.7 238 60.1
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 6.2e-66 256.1 350 54.9
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.5e-62 244.2 545 40.0
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.7e-61 240.7 391 39.9
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 4.6e-61 240.0 348 47.4
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.6e-56 224.2 395 54.4
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 2.2e-55 221.1 369 50.9
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.7e-52 209.5 373 43.2
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 8.5e-47 192.6 308 46.4
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.9e-45 186.0 242 50.4
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.0e-35 154.8 98 73.5
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.3e-26 125.6 181 50.3
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-25 122.1 258 40.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 5.3e-25 120.2 220 45.0
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-23 115.2 217 48.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.2e-21 109.0 175 46.9
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.3e-18 96.7 208 45.2
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.8e-17 95.1 176 44.3
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 5.4e-17 93.6 55 70.9
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.7e-16 91.3 151 38.4
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-15 89.0 109 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.7e-15 88.6 246 37.4
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-15 87.0 278 28.1
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.0e-15 87.0 214 36.0
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.5e-15 86.7 70 75.7
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.5e-15 86.3 119 42.0
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.5e-14 85.5 53 71.7
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 6.1e-13 80.1 79 57.0
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.1e-13 80.1 79 57.0
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 4.0e-12 77.4 108 40.7
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.0e-11 75.1 110 48.2
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.3e-10 72.4 71 52.1
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 4.1e-09 67.4 81 48.1
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.4e-09 67.0 113 43.4
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.4e-09 67.0 72 51.4
FAN25G3576 Fragaria x ananassa HOM05D003850 ORTHO05D200166 4.5e-08 63.9 48 60.4
FAN21G1015 Fragaria x ananassa HOM05D003850 ORTHO05D210711 5.0e-07 60.5 60 58.3
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.1e-06 59.3 64 50.0
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.1e-06 59.3 130 30.8
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.5e-06 58.2 54 55.6
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.5e-06 58.2 89 47.2
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 2.5e-06 58.2 92 38.0


User provided reference genes

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