Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.4e-129 464.2 246 100.0
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.7e-126 454.1 249 97.6
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 7.9e-103 377.5 201 100.0
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 6.3e-100 367.9 201 97.5
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-90 337.0 184 100.0
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 1.9e-88 329.7 205 84.4
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.1e-87 326.2 184 94.0
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 6.1e-63 245.0 214 69.2
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.6e-61 239.6 245 61.2
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.7e-57 226.9 246 56.1
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 6.6e-57 224.9 209 63.6
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.5e-56 223.8 204 65.2
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 7.3e-56 221.5 203 67.5
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.2e-55 220.7 198 63.1
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 2.8e-55 219.5 209 59.8
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 2.8e-55 219.5 204 62.7
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 6.2e-55 218.4 206 63.6
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.8e-54 216.9 211 61.1
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 2.3e-54 216.5 203 63.1
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 4.0e-54 215.7 211 65.4
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 6.8e-54 214.9 209 60.3
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 6.8e-54 214.9 205 60.5
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 8.9e-54 214.5 206 62.1
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 8.9e-54 214.5 211 63.0
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.2e-53 214.2 199 61.3
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 2.0e-53 213.4 208 63.9
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.0e-53 213.4 211 60.7
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 2.0e-53 213.4 208 60.1
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 5.8e-53 211.8 205 61.5
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 5.8e-53 211.8 207 61.8
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 7.5e-53 211.5 212 64.6
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 7.5e-53 211.5 204 63.7
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 9.8e-53 211.1 208 65.4
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 1.7e-52 210.3 208 58.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.1e-51 207.6 211 63.0
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.4e-51 206.5 207 65.7
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.4e-51 206.5 206 58.3
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 9.2e-51 204.5 209 63.2
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 3.5e-50 202.6 205 58.0
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 6.0e-50 201.8 211 59.7
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 1.7e-49 200.3 207 60.4
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 2.3e-49 199.9 209 57.4
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 3.0e-49 199.5 211 58.8
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 3.9e-49 199.1 210 57.1
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 3.9e-49 199.1 205 65.4
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 5.0e-49 198.7 209 63.6
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 5.0e-49 198.7 207 56.0
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 6.6e-49 198.4 206 57.8
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 6.6e-49 198.4 221 54.3
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 1.5e-48 197.2 209 61.7
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.9e-48 196.8 202 59.9
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 4.3e-48 195.7 202 60.9
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 7.3e-48 194.9 217 52.5
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 7.3e-48 194.9 217 52.5
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.6e-47 193.7 200 61.0
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.6e-47 193.7 203 61.1
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 4.7e-47 192.2 227 52.0
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 2.3e-46 189.9 200 60.0
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 4.0e-46 189.1 204 56.4
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 6.8e-46 188.3 205 56.6
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 8.9e-46 188.0 229 52.4
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 4.4e-45 185.7 203 58.1
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 2.9e-44 183.0 203 59.1
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 6.4e-44 181.8 209 56.0
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 6.4e-44 181.8 189 60.8
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 3.2e-43 179.5 115 77.4
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 5.4e-43 178.7 239 54.0
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 7.1e-43 178.3 201 58.7
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.2e-42 177.6 132 72.0
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 3.5e-42 176.0 208 56.2
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 4.6e-42 175.6 186 57.0
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 6.0e-42 175.3 214 52.8
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 7.8e-42 174.9 223 51.1
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.3e-41 174.1 186 54.8
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.7e-41 173.7 242 48.3
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 2.3e-41 173.3 221 50.7
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 6.6e-41 171.8 205 53.7
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.6e-41 171.8 207 53.1
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 8.6e-41 171.4 205 56.6
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 3.3e-40 169.5 202 53.5
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 3.3e-40 169.5 199 58.3
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 4.3e-40 169.1 189 56.1
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 5.6e-40 168.7 110 74.5
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 5.6e-40 168.7 119 69.7
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 7.3e-40 168.3 117 70.9
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 7.3e-40 168.3 185 58.4
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 9.5e-40 167.9 211 54.5
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-39 167.5 110 73.6
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.6e-39 167.2 204 56.4
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.6e-39 167.2 208 53.4
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 2.8e-39 166.4 203 56.2
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 3.6e-39 166.0 204 56.4
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 6.2e-39 165.2 121 72.7
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 6.2e-39 165.2 168 63.1
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 6.2e-39 165.2 207 51.7
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.1e-38 164.5 180 54.4
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.1e-38 164.5 208 53.4
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.8e-38 163.7 121 71.9
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 3.1e-38 162.9 121 70.2
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 3.1e-38 162.9 121 70.2
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 3.1e-38 162.9 210 55.2
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 6.8e-38 161.8 222 50.9
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 8.9e-38 161.4 227 48.0
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.2e-37 161.0 201 54.2
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 3.4e-37 159.5 207 52.2
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.4e-37 159.1 207 50.7
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 4.4e-37 159.1 188 56.9
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 4.4e-37 159.1 136 66.2
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 5.8e-37 158.7 202 52.5
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 5.8e-37 158.7 202 52.5
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 7.6e-37 158.3 268 42.2
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 7.6e-37 158.3 120 69.2
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 9.9e-37 157.9 203 55.2
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.3e-36 157.5 116 71.6
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.3e-36 157.5 116 71.6
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 2.9e-36 156.4 182 54.9
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 4.9e-36 155.6 188 55.9
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 6.4e-36 155.2 150 59.3
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 5.4e-35 152.1 209 50.2
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 5.4e-35 152.1 199 53.8
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 7.1e-35 151.8 182 57.7
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 7.8e-34 148.3 129 65.9
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.3e-33 147.5 196 50.0
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.3e-33 147.5 198 52.0
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 2.3e-33 146.7 119 68.9
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 6.6e-33 145.2 201 50.2
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-32 144.4 155 54.8
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-32 144.4 155 54.8
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.5e-32 144.1 197 50.3
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 1.5e-32 144.1 101 70.3
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.5e-32 143.3 206 53.4
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.6e-31 139.4 252 44.8
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 4.0e-30 136.0 194 53.6
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.9e-30 135.2 195 48.2
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 6.9e-30 135.2 193 53.9
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.0e-29 133.7 124 63.7
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.4e-29 132.9 218 45.9
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 5.8e-29 132.1 111 61.3
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 5.8e-29 132.1 197 48.2
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 5.8e-29 132.1 123 64.2
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 9.9e-29 131.3 193 50.3
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.3e-28 131.0 108 65.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.7e-28 130.6 188 52.7
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.2e-28 130.2 93 69.9
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 4.9e-28 129.0 188 49.5
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.4e-27 127.5 192 47.4
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.2e-27 125.9 191 50.3
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.2e-27 125.9 191 50.3
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 5.4e-27 125.6 170 54.7
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 7.1e-27 125.2 186 46.8
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 7.1e-27 125.2 100 71.0
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 7.1e-27 125.2 100 71.0
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 7.1e-27 125.2 202 51.0
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 7.1e-27 125.2 205 45.9
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 9.3e-27 124.8 97 69.1
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 9.3e-27 124.8 97 69.1
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.2e-26 124.4 127 57.5
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.6e-26 124.0 202 50.5
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 3.5e-26 122.9 173 50.3
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 6.6e-25 118.6 191 46.1
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 3.3e-24 116.3 197 43.7
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 1.6e-23 114.0 62 82.3
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 8.1e-23 111.7 96 66.7
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 1.1e-22 111.3 62 83.9
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.1e-22 111.3 61 85.2
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 6.9e-22 108.6 234 37.6
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 9.0e-22 108.2 215 42.3
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.2e-21 107.8 120 55.0
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 9.9e-21 104.8 187 49.2
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 6.4e-20 102.1 200 44.0
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.3e-17 94.4 91 57.1
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 6.7e-17 92.0 197 40.6
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 6.7e-17 92.0 197 40.6
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 3.3e-16 89.7 83 60.2
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.6e-16 89.0 186 41.4
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 1.2e-13 81.3 41 82.9
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 6.0e-10 68.9 66 57.6
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 1.3e-07 61.2 41 65.9
Aa31LG5G2650 Aethionema arabicum HOM05D003686 ORTHO05D004322 1.8e-06 57.4 129 38.8
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 1.8e-06 57.4 179 35.8
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 1.8e-06 57.4 73 49.3


User provided reference genes

Program Settings