Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0613 Fragaria x ananassa HOM05D004747 ORTHO05D035492 1.2e-52 209.5 100 100.0
FvH4_7g02770 Fragaria vesca HOM05D004747 ORTHO05D035492 5.4e-50 200.7 100 97.0
FAN11G0640 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.0e-40 168.3 96 84.4
FAN11G3309 Fragaria x ananassa HOM05D004747 ORTHO05D035492 7.1e-34 147.1 72 97.2
FAN18G0465 Fragaria x ananassa HOM05D004747 ORTHO05D006051 1.3e-30 136.3 68 95.6
FAN26G3322 Fragaria x ananassa HOM05D004747 ORTHO05D006051 6.2e-30 134.0 67 94.0
FAN23G0552 Fragaria x ananassa HOM05D004747 ORTHO05D006051 3.9e-24 114.8 70 81.4
FAN23G0698 Fragaria x ananassa HOM05D004747 ORTHO05D006051 3.9e-24 114.8 70 81.4
MD15G1264400 Malus domestica HOM05D004747 ORTHO05D006051 3.6e-22 108.2 54 87.0
Oeu007440.1 Olea europaea HOM05D004747 ORTHO05D006051 2.9e-19 98.6 55 80.0
FAN28G1132 Fragaria x ananassa HOM05D004747 ORTHO05D006051 4.9e-19 97.8 50 88.0
MBI16_g37699_MAGBIO Magnolia biondii HOM05D004747 ORTHO05D006051 8.4e-19 97.1 62 69.4
Lsat_1_v5_gn_2_76601 Lactuca sativa HOM05D004747 ORTHO05D006051 1.4e-18 96.3 52 84.6
vmacro12724 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 1.9e-18 95.9 46 93.5
RcHm_v2.0_Chr2g0101831 Rosa chinensis HOM05D004747 ORTHO05D006051 2.4e-18 95.5 44 97.7
Migut.H01001 Erythranthe guttata HOM05D004747 ORTHO05D006051 3.2e-18 95.1 52 80.8
FvH4_1g13450 Fragaria vesca HOM05D004747 ORTHO05D006051 3.2e-18 95.1 44 95.5
FAN19G0426 Fragaria x ananassa HOM05D004747 ORTHO05D006051 3.2e-18 95.1 44 95.5
vmacro17845 Vaccinium macrocarpon HOM05D004747 ORTHO05D006051 4.2e-18 94.7 46 89.1
Sabra07G0023600 Salix brachista HOM05D004747 ORTHO05D006051 7.1e-18 94.0 47 83.0
MD02G1149800 Malus domestica HOM05D004747 ORTHO05D006051 9.3e-18 93.6 51 78.4
Lj4A199T81 Lonicera japonica HOM05D004747 ORTHO05D006051 1.2e-17 93.2 46 84.8
GSVIVG01018981001 Vitis vinifera HOM05D004747 ORTHO05D006051 1.2e-17 93.2 57 75.4
Dinv39972 Davidia involucrata HOM05D004747 ORTHO05D006051 3.5e-17 91.7 44 88.6
HanXRQChr07g0192831 Helianthus annuus HOM05D004747 ORTHO05D006051 3.5e-17 91.7 44 90.9
Manes.01G134400 Manihot esculenta HOM05D004747 ORTHO05D006051 3.5e-17 91.7 57 71.9
Actinidia19177 Actinidia chinensis HOM05D004747 ORTHO05D006051 4.6e-17 91.3 50 80.0
CANSAT01G3054 Cannabis sativa HOM05D004747 ORTHO05D006051 4.6e-17 91.3 57 73.7
HanXRQChr14g0441201 Helianthus annuus HOM05D004747 ORTHO05D006051 4.6e-17 91.3 44 90.9
PSO541G4083 Papaver somniferum HOM05D004747 ORTHO05D006051 4.6e-17 91.3 44 90.9
PSO675G8944 Papaver somniferum HOM05D004747 ORTHO05D006051 4.6e-17 91.3 44 90.9
Rhsim08G0114500 Rhododendron simsii HOM05D004747 ORTHO05D006051 4.6e-17 91.3 44 90.9
unitig_21.g20956 Utricularia gibba HOM05D004747 ORTHO05D006051 4.6e-17 91.3 57 71.9
DCAR_025922 Daucus carota HOM05D004747 ORTHO05D006051 6.0e-17 90.9 52 76.9
arahy.Tifrunner.gnm1.ann1.0AQ0IW Arachis hypogaea HOM05D004747 ORTHO05D006051 7.9e-17 90.5 47 80.9
Haze_15104 Corylus avellana HOM05D004747 ORTHO05D006051 7.9e-17 90.5 68 61.8
Sp2g29940 Schrenkiella parvula HOM05D004747 ORTHO05D006051 7.9e-17 90.5 57 73.7
SGA_v2.0_scaffold276G46638 Striga asiatica HOM05D004747 ORTHO05D006051 7.9e-17 90.5 44 88.6
Thhalv10004249m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 1.0e-16 90.1 57 73.7
Nn1g05031 Nelumbo nucifera HOM05D004747 ORTHO05D006051 1.0e-16 90.1 44 88.6
Prupe.7G153200 Prunus persica HOM05D004747 ORTHO05D006051 1.0e-16 90.1 44 86.4
PGSC0003DMG400014893 Solanum tuberosum HOM05D004747 ORTHO05D006051 1.0e-16 90.1 57 70.2
TAR628G1004 Trochodendron aralioides HOM05D004747 ORTHO05D006051 1.0e-16 90.1 44 88.6
Aqoxy5G01657 Aquilegia oxysepala HOM05D004747 ORTHO05D006051 1.3e-16 89.7 57 70.2
CSS0048961 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 1.3e-16 89.7 44 88.6
PGR102G2748 Punica granatum HOM05D004747 ORTHO05D006051 1.3e-16 89.7 57 71.9
arahy.Tifrunner.gnm1.ann1.Q9RGLK Arachis hypogaea HOM05D004747 ORTHO05D006051 1.8e-16 89.4 47 78.7
BolC7t43037H Brassica oleracea HOM05D002587 ORTHO05D002778 1.8e-16 89.4 51 78.4
CSS0024014 Camellia sinensis var. sinensis HOM05D004747 ORTHO05D006051 1.8e-16 89.4 44 88.6
Duzib264G0087 Durio zibethinus HOM05D004747 ORTHO05D006051 1.8e-16 89.4 44 86.4
Nitab4.5_0000434g0070 Nicotiana tabacum HOM05D004747 ORTHO05D006051 1.8e-16 89.4 50 76.0
Nitab4.5_0004711g0020 Nicotiana tabacum HOM05D004747 ORTHO05D006051 1.8e-16 89.4 50 76.0
QL06p045737 Quercus lobata HOM05D004747 ORTHO05D006051 1.8e-16 89.4 61 70.5
Thecc.01G037400 Theobroma cacao HOM05D004747 ORTHO05D006051 1.8e-16 89.4 44 86.4
BcaB02g09994 Brassica carinata HOM05D000104 ORTHO05D006241 2.3e-16 89.0 57 71.9
BcaB04g20104 Brassica carinata HOM05D000104 ORTHO05D006241 2.3e-16 89.0 57 71.9
BcaC04g23156 Brassica carinata HOM05D004747 ORTHO05D006051 2.3e-16 89.0 57 71.9
A09p09800 Brassica napus HOM05D000104 ORTHO05D006241 2.3e-16 89.0 57 71.9
C09p11600 Brassica napus HOM05D000104 ORTHO05D006241 2.3e-16 89.0 57 71.9
BolC9t54053H Brassica oleracea HOM05D004747 ORTHO05D006051 2.3e-16 89.0 57 71.9
BraA09t36627Z Brassica rapa HOM05D000104 ORTHO05D006241 2.3e-16 89.0 57 71.9
Cc07_g09390 Coffea canephora HOM05D004747 ORTHO05D006051 2.3e-16 89.0 44 88.6
Gohir.A10G095200 Gossypium hirsutum HOM05D004747 ORTHO05D006051 2.3e-16 89.0 44 84.1
Gohir.D10G092700 Gossypium hirsutum HOM05D004747 ORTHO05D006051 2.3e-16 89.0 44 84.1
Dinv26824 Davidia involucrata HOM05D004747 ORTHO05D006051 3.0e-16 88.6 44 86.4
Solyc02g085420.4 Solanum lycopersicum HOM05D004747 ORTHO05D006051 3.0e-16 88.6 57 70.2
TAR376G1008 Trochodendron aralioides HOM05D004747 ORTHO05D006051 3.0e-16 88.6 44 86.4
Aa31LG1G15300 Aethionema arabicum HOM05D004747 ORTHO05D006051 3.9e-16 88.2 57 70.2
DCAR_017262 Daucus carota HOM05D004747 ORTHO05D006051 3.9e-16 88.2 44 84.1
Sopen02g030100 Solanum pennellii HOM05D004747 ORTHO05D006051 3.9e-16 88.2 57 70.2
Ciclev10025502m.g Citrus clementina HOM05D004747 ORTHO05D006051 5.1e-16 87.8 44 84.1
Manes.02G092600 Manihot esculenta HOM05D004747 ORTHO05D006051 5.1e-16 87.8 57 71.9
Peaxi162Scf00515g00430 Petunia axillaris HOM05D004747 ORTHO05D006051 5.1e-16 87.8 44 84.1
ATR0733G064 Amborella trichopoda HOM05D004747 ORTHO05D006051 6.7e-16 87.4 44 86.4
CAN.G358.106 Capsicum annuum HOM05D004747 ORTHO05D006051 6.7e-16 87.4 57 66.7
ECA238G3955 Erigeron canadensis HOM05D004747 ORTHO05D006051 8.7e-16 87.0 44 86.4
Oeu054757.1 Olea europaea HOM05D004747 ORTHO05D006051 1.1e-15 86.7 44 86.4
Sp5g11550 Schrenkiella parvula HOM05D004747 ORTHO05D006051 1.1e-15 86.7 45 80.0
Duzib187G1223 Durio zibethinus HOM05D004747 ORTHO05D006051 1.5e-15 86.3 44 84.1
Glyma.11G067300 Glycine max HOM05D004747 ORTHO05D006051 1.5e-15 86.3 57 64.9
Potri.007G026900 Populus trichocarpa HOM05D004747 ORTHO05D006051 1.5e-15 86.3 44 81.8
HPP92_014469 Vanilla planifolia HOM05D004747 ORTHO05D006051 1.5e-15 86.3 44 81.8
VMungo1215G2053 Vigna mungo HOM05D004747 ORTHO05D006051 1.5e-15 86.3 57 66.7
Atru.chr3.560 Acer truncatum HOM05D004747 ORTHO05D006051 1.9e-15 85.9 44 81.8
AL5G30830 Arabidopsis lyrata HOM05D004747 ORTHO05D006051 1.9e-15 85.9 57 66.7
AT3G50670 Arabidopsis thaliana HOM05D004747 ORTHO05D006051 1.9e-15 85.9 57 66.7
Eucgr.H01267 Eucalyptus grandis HOM05D004747 ORTHO05D006051 1.9e-15 85.9 44 84.1
Gorai.011G101900 Gossypium raimondii HOM05D004747 ORTHO05D006051 1.9e-15 85.9 44 81.8
Phvul.002G029300 Phaseolus vulgaris HOM05D004747 ORTHO05D006051 1.9e-15 85.9 57 66.7
TWI09G1640 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 1.9e-15 85.9 44 84.1
TWI53G0963 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 1.9e-15 85.9 44 84.1
Glyma.01G175100 Glycine max HOM05D004747 ORTHO05D006051 2.5e-15 85.5 44 79.5
Lalb_Chr05g0212861 Lupinus albus HOM05D004747 ORTHO05D006051 2.5e-15 85.5 44 79.5
Potri.005G124300 Populus trichocarpa HOM05D004747 ORTHO05D006051 2.5e-15 85.5 44 81.8
BcaC06g34739 Brassica carinata HOM05D004747 ORTHO05D006051 3.3e-15 85.1 44 81.8
C07p25050 Brassica napus HOM05D004747 ORTHO05D006051 3.3e-15 85.1 50 78.0
Lj4g0010267 Lotus japonicus HOM05D004747 ORTHO05D006051 3.3e-15 85.1 44 79.5
Sc07g0000250 Simmondsia chinensis HOM05D004747 ORTHO05D006051 3.3e-15 85.1 44 81.8
A07p17190 Brassica napus HOM05D004747 ORTHO05D006051 4.3e-15 84.7 44 84.1
CiPaw.02G016400 Carya illinoinensis HOM05D004747 ORTHO05D006051 4.3e-15 84.7 46 80.4
Thhalv10010375m.g Eutrema salsugineum HOM05D004747 ORTHO05D006051 5.6e-15 84.3 44 79.5
Carub.0005s1700 Capsella rubella HOM05D004747 ORTHO05D006051 7.4e-15 84.0 57 64.9
Ca_22260_v3 Cicer arietinum L. HOM05D004747 ORTHO05D006051 7.4e-15 84.0 44 81.8
Medtr8g077840 Medicago truncatula HOM05D004747 ORTHO05D006051 7.4e-15 84.0 44 81.8
Os10g0115600 Oryza sativa ssp. japonica HOM05D004747 ORTHO05D006051 7.4e-15 84.0 44 81.8
PSO731G0026 Papaver somniferum HOM05D004747 ORTHO05D006051 7.4e-15 84.0 44 79.5
SMO196G0248 Selaginella moellendorffii HOM05D004747 ORTHO05D006051 7.4e-15 84.0 45 80.0
TPR.G34973 Trifolium pratense HOM05D004747 ORTHO05D006051 7.4e-15 84.0 44 81.8
Zm00001eb224440 Zea mays HOM05D004747 ORTHO05D006051 7.4e-15 84.0 57 66.7
CDE03G0295 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 9.6e-15 83.6 46 76.1
PSO764G0172 Papaver somniferum HOM05D004747 ORTHO05D006051 9.6e-15 83.6 44 77.3
Psat4g092040 Pisum sativum HOM05D004747 ORTHO05D006051 9.6e-15 83.6 44 81.8
Sc16g0000910 Simmondsia chinensis HOM05D004747 ORTHO05D006051 9.6e-15 83.6 44 79.5
Cfa004298 Carpinus fangiana HOM05D000682 ORTHO05D000510 1.3e-14 83.2 44 81.8
Lalb_Chr09g0333571 Lupinus albus HOM05D004747 ORTHO05D006051 1.3e-14 83.2 57 66.7
Hund14148 Selenicereus undatus HOM05D004747 ORTHO05D006051 1.6e-14 82.8 45 77.8
CARHR280960 Cardamine hirsuta HOM05D004747 ORTHO05D006051 2.1e-14 82.4 44 81.8
CBR_g28042 Chara braunii HOM05D004747 ORTHO05D006051 2.1e-14 82.4 44 75.0
CiPaw.01G036600 Carya illinoinensis HOM05D004747 ORTHO05D006051 2.8e-14 82.0 46 78.3
TWI73G1158 Tripterygium wilfordii HOM05D004747 ORTHO05D006051 3.7e-14 81.6 44 79.5
Pp3c7_6390 Physcomitrium patens HOM05D004747 ORTHO05D006051 4.8e-14 81.3 44 75.0
Lalb_Chr05g0227631 Lupinus albus HOM05D004747 ORTHO05D006051 6.2e-14 80.9 44 77.3
CDE04G0203 Ceratophyllum demersum HOM05D004747 ORTHO05D006051 8.1e-14 80.5 46 73.9
MELO3C007821.2 Cucumis melo HOM05D004747 ORTHO05D006051 8.1e-14 80.5 53 66.0
CsaV3_6G046180 Cucumis sativus L. HOM05D004747 ORTHO05D006051 8.1e-14 80.5 53 66.0
Mapoly0005s0256 Marchantia polymorpha HOM05D004747 ORTHO05D006051 8.1e-14 80.5 44 77.3
Pp3c11_26490 Physcomitrium patens HOM05D004747 ORTHO05D006051 8.1e-14 80.5 44 75.0
ClCG01G019460 Citrullus lanatus HOM05D004747 ORTHO05D006051 1.4e-13 79.7 59 61.0
Sed0005805 Sechium edule HOM05D004747 ORTHO05D006051 1.4e-13 79.7 53 64.2
Cpa.g.sc337.7 Carica papaya HOM05D004747 ORTHO05D006051 2.4e-13 79.0 44 72.7
AUR62003163 Chenopodium quinoa HOM05D004747 ORTHO05D006051 2.4e-13 79.0 44 77.3
Sed0017755 Sechium edule HOM05D004747 ORTHO05D006051 4.0e-13 78.2 53 64.2
SMO141G0295 Selaginella moellendorffii HOM05D004747 ORTHO05D006051 9.0e-13 77.0 44 70.5
PRCOL_00001882 Prasinoderma coloniale HOM05D004747 ORTHO05D006051 4.5e-12 74.7 57 57.9
Cre16.g656250 Chlamydomonas reinhardtii HOM05D004747 ORTHO05D006051 1.0e-11 73.6 44 65.9
EL10Ac6g14938 Beta vulgaris HOM05D004747 ORTHO05D006051 4.9e-11 71.2 57 59.6
Ah.02g126430 Amaranthus hybridus HOM05D004747 ORTHO05D006051 8.4e-11 70.5 57 59.6
Sabra05G0102100 Salix brachista HOM05D004747 ORTHO05D006051 1.9e-10 69.3 44 68.2
CANSAT78G0391 Cannabis sativa HOM05D004170 ORTHO05D005976 1.5e-07 59.7 47 53.2
FAN22G0324 Fragaria x ananassa HOM05D004170 ORTHO05D005976 4.3e-07 58.2 47 51.1
RcHm_v2.0_Chr4g0412301 Rosa chinensis HOM05D004170 ORTHO05D005976 5.7e-07 57.8 47 51.1
Sc25g0001640 Simmondsia chinensis HOM05D004170 ORTHO05D005976 5.7e-07 57.8 45 53.3
MELO3C006785.2 Cucumis melo HOM05D004170 ORTHO05D005976 7.4e-07 57.4 43 55.8
Peaxi162Scf00286g00334 Petunia axillaris HOM05D004170 ORTHO05D005976 7.4e-07 57.4 49 53.1
MSTRG.27998 Avicennia marina HOM05D004170 ORTHO05D005976 1.3e-06 56.6 47 51.1
FvH4_4g12800 Fragaria vesca HOM05D004170 ORTHO05D005976 1.3e-06 56.6 47 48.9
FAN12G0511 Fragaria x ananassa HOM05D004170 ORTHO05D005976 1.3e-06 56.6 47 48.9
SalBow3G0935 Salvia bowleyana HOM05D004170 ORTHO05D005976 1.6e-06 56.2 47 48.9
SGA_v2.0_scaffold81G26074 Striga asiatica HOM05D004170 ORTHO05D005976 2.1e-06 55.8 47 51.1
Aqoxy2G04112 Aquilegia oxysepala HOM05D004170 ORTHO05D005976 2.8e-06 55.5 45 53.3
Cc03_g15010 Coffea canephora HOM05D004170 ORTHO05D005976 3.7e-06 55.1 47 48.9
Duzib093G1865 Durio zibethinus HOM05D004170 ORTHO05D005976 3.7e-06 55.1 47 46.8
Manes.04G040300 Manihot esculenta HOM05D004170 ORTHO05D005976 4.8e-06 54.7 45 48.9
MCO05G091 Micromonas commoda HOM05D004747 ORTHO05D006051 6.2e-06 54.3 47 48.9
Oeu027735.1 Olea europaea HOM05D004170 ORTHO05D005976 6.2e-06 54.3 45 51.1
RcHm_v2.0_Chr4g0412221 Rosa chinensis HOM05D004170 ORTHO05D005976 6.2e-06 54.3 47 48.9
CSS0008998 Camellia sinensis var. sinensis HOM05D004170 ORTHO05D005976 8.2e-06 53.9 45 48.9
Cfa025930 Carpinus fangiana HOM05D004747 ORTHO05D006051 8.2e-06 53.9 46 45.7
Glyma.18G296100 Glycine max HOM05D004170 ORTHO05D005976 8.2e-06 53.9 45 53.3
Gohir.A09G168800 Gossypium hirsutum HOM05D004170 ORTHO05D005976 8.2e-06 53.9 47 48.9
Gohir.D09G164500 Gossypium hirsutum HOM05D004170 ORTHO05D005976 8.2e-06 53.9 47 48.9
Gorai.006G186300 Gossypium raimondii HOM05D004170 ORTHO05D005976 8.2e-06 53.9 47 48.9
PGR142G1978 Punica granatum HOM05D004170 ORTHO05D005976 8.2e-06 53.9 45 51.1
SEGI_04703 Sequoiadendron giganteum HOM05D004170 ORTHO05D005976 8.2e-06 53.9 45 48.9
SGA_v2.0_scaffold33G13369 Striga asiatica HOM05D004747 ORTHO05D006051 8.2e-06 53.9 30 80.0


User provided reference genes

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