Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-130 469.9 249 100.0
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.0e-126 454.9 249 97.6
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.8e-101 370.5 204 98.0
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 7.8e-98 360.9 204 95.6
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.5e-88 330.1 187 97.9
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 6.2e-87 324.7 208 83.2
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.6e-85 319.3 187 92.0
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 2.0e-61 240.0 217 68.2
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 4.9e-60 235.3 248 60.5
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 1.3e-55 220.7 212 62.7
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 2.1e-55 219.9 249 55.0
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 4.8e-55 218.8 207 64.3
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 2.4e-54 216.5 206 66.5
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 3.1e-54 216.1 201 62.2
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 9.0e-54 214.5 212 59.0
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 9.0e-54 214.5 207 61.8
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.0e-53 213.4 209 62.7
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.8e-53 211.8 214 60.3
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 7.6e-53 211.5 206 62.1
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.3e-52 210.7 214 64.5
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 2.2e-52 209.9 212 59.4
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.2e-52 209.9 208 59.6
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 2.9e-52 209.5 209 61.2
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 2.9e-52 209.5 214 62.1
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 3.8e-52 209.1 211 59.2
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.8e-52 209.1 202 60.4
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 6.4e-52 208.4 211 63.0
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 6.4e-52 208.4 214 59.8
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 6.4e-52 208.4 208 61.1
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 1.1e-51 207.6 210 61.0
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.9e-51 206.8 207 62.8
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.4e-51 206.5 215 63.7
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 3.2e-51 206.1 211 64.5
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 5.5e-51 205.3 211 57.3
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 3.5e-50 202.6 214 62.1
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 7.9e-50 201.4 210 64.8
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 7.9e-50 201.4 209 57.4
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 1.1e-48 197.6 212 61.8
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 1.1e-48 197.6 208 57.2
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 1.9e-48 196.8 214 58.9
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 5.6e-48 195.3 210 59.5
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 7.4e-48 194.9 212 56.6
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 9.6e-48 194.5 214 57.9
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 1.3e-47 194.1 213 56.3
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.3e-47 194.1 208 64.4
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.6e-47 193.7 212 62.7
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 1.6e-47 193.7 210 55.2
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 2.1e-47 193.4 224 53.6
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 4.8e-47 192.2 212 60.8
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 6.2e-47 191.8 205 59.0
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 8.2e-47 191.4 209 56.5
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.4e-46 190.7 205 60.0
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.4e-46 189.9 220 51.8
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.4e-46 189.9 220 51.8
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 5.3e-46 188.7 203 60.1
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 5.3e-46 188.7 206 60.2
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 1.5e-45 187.2 230 51.3
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 7.6e-45 184.9 203 59.1
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.3e-44 184.1 207 55.6
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 2.2e-44 183.3 208 55.8
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 2.9e-44 183.0 232 51.7
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.1e-43 181.0 206 57.3
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 5.5e-43 178.7 206 58.3
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 2.1e-42 176.8 212 55.2
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 2.1e-42 176.8 192 59.9
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 7.9e-42 174.9 118 75.4
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 1.8e-41 173.7 204 57.8
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 3.0e-41 172.9 135 70.4
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 6.7e-41 171.8 242 52.9
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.1e-40 171.0 211 55.5
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.5e-40 170.6 189 56.1
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 1.9e-40 170.2 217 52.1
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 2.5e-40 169.9 226 50.4
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 4.3e-40 169.1 194 53.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 5.7e-40 168.7 245 47.8
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 7.4e-40 168.3 224 50.0
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.6e-39 167.2 208 52.9
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 2.8e-39 166.4 208 55.8
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.7e-39 166.0 210 52.4
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 1.1e-38 164.5 192 55.2
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 1.1e-38 164.5 205 52.7
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 1.1e-38 164.5 202 57.4
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 1.4e-38 164.1 113 72.6
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 1.4e-38 164.1 122 68.0
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 1.8e-38 163.7 214 53.7
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.4e-38 163.3 120 69.2
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 2.4e-38 163.3 193 56.5
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 3.1e-38 162.9 113 71.7
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 6.9e-38 161.8 196 56.6
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 9.0e-38 161.4 206 55.3
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 1.2e-37 161.0 207 55.6
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.5e-37 160.6 124 71.0
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.5e-37 160.6 171 62.0
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.0e-37 160.2 211 52.1
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 3.4e-37 159.5 183 53.6
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.4e-37 159.5 210 51.0
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 5.9e-37 158.7 124 70.2
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 5.9e-37 158.7 211 52.6
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 7.6e-37 158.3 124 68.5
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 7.6e-37 158.3 124 68.5
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.0e-36 157.9 213 54.5
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.2e-36 156.8 225 50.2
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 3.8e-36 156.0 191 55.5
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.1e-35 154.5 230 47.0
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.1e-35 154.5 210 51.4
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.1e-35 154.5 139 64.7
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.4e-35 154.1 196 55.1
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.9e-35 153.7 205 51.7
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.9e-35 153.7 205 51.7
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.9e-35 153.7 123 67.5
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 2.5e-35 153.3 271 41.7
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.5e-35 153.3 210 50.0
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 3.2e-35 152.9 206 54.4
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.2e-35 152.5 119 69.7
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.2e-35 152.5 119 69.7
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 9.4e-35 151.4 153 58.2
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 9.4e-35 151.4 185 54.1
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 1.6e-34 150.6 191 55.0
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 1.8e-33 147.1 212 49.5
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 1.8e-33 147.1 202 53.0
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 2.3e-33 146.7 185 56.8
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.9e-32 143.7 132 64.4
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 4.3e-32 142.5 201 51.2
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 5.7e-32 142.1 122 67.2
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.7e-31 140.6 199 48.7
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 2.2e-31 140.2 204 49.5
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.8e-31 139.8 158 53.8
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.8e-31 139.8 158 53.8
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.7e-31 139.4 198 49.0
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 3.7e-31 139.4 104 68.3
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 8.2e-31 138.3 209 52.6
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.2e-29 134.4 255 44.3
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 7.7e-29 131.7 218 45.9
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.7e-28 130.6 196 46.9
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 2.2e-28 130.2 196 53.1
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 5.0e-28 129.0 196 52.6
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 5.0e-28 129.0 127 62.2
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.4e-27 127.5 131 56.5
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.4e-27 127.5 195 48.2
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.4e-27 127.5 126 62.7
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.9e-27 127.1 166 50.6
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 3.2e-27 126.3 111 64.0
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.2e-27 126.3 196 49.5
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 5.5e-27 125.6 96 67.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 5.5e-27 125.6 191 51.8
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 6.1e-26 122.1 191 48.2
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.4e-25 120.9 194 49.5
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.4e-25 120.9 194 49.5
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 2.3e-25 120.2 189 46.0
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.3e-25 120.2 103 68.9
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.3e-25 120.2 103 68.9
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.3e-25 120.2 205 50.2
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 2.3e-25 120.2 173 53.8
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 2.3e-25 120.2 100 67.0
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 2.3e-25 120.2 100 67.0
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 2.3e-25 120.2 208 45.2
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 3.0e-25 119.8 130 56.2
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 5.1e-25 119.0 205 49.8
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 8.8e-25 118.2 176 49.4
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 2.2e-23 113.6 194 45.4
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.4e-22 110.9 200 43.0
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 4.1e-22 109.4 65 78.5
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.3e-22 109.0 186 45.7
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 2.0e-21 107.1 123 53.7
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.0e-21 107.1 67 77.6
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 2.6e-21 106.7 65 80.0
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 2.6e-21 106.7 99 64.6
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 7.7e-21 105.1 237 37.6
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.2e-19 99.8 190 48.4
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 1.6e-18 97.4 203 43.3
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.4e-17 94.4 90 57.8
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 5.2e-17 92.4 197 40.6
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 5.2e-17 92.4 197 40.6
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 2.6e-16 90.1 88 56.8
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.7e-16 89.0 186 41.4
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 3.8e-12 76.3 44 77.3
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 1.0e-09 68.2 69 55.1
Aa31LG5G2650 Aethionema arabicum HOM05D003686 ORTHO05D004322 2.4e-06 57.0 129 38.8
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 3.1e-06 56.6 182 35.2
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 3.1e-06 56.6 76 47.4
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 4.1e-06 56.2 44 61.4


User provided reference genes

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