Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4315 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.9e-64 246.9 121 100.0
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.2e-56 223.0 109 96.3
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 3.3e-54 214.9 109 92.7
FAN05G0659 Fragaria x ananassa HOM05D002341 ORTHO05D003165 5.7e-54 214.2 108 93.5
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.1e-49 199.9 109 86.2
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 1.5e-49 199.5 109 85.3
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 1.5e-49 199.5 109 86.2
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 1.9e-49 199.1 109 86.2
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
C04p60540 Brassica napus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 85.3
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
unitig_747.g21299 Utricularia gibba HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 2.5e-49 198.7 109 86.2
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 3.2e-49 198.4 109 84.4
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 3.2e-49 198.4 109 86.2
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 3.2e-49 198.4 109 86.2
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 3.2e-49 198.4 109 85.3
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 3.2e-49 198.4 109 86.2
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 3.2e-49 198.4 109 86.2
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 5.5e-49 197.6 109 85.3
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 5.5e-49 197.6 109 85.3
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 7.2e-49 197.2 109 85.3
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 7.2e-49 197.2 109 85.3
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 7.2e-49 197.2 109 85.3
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 7.2e-49 197.2 109 85.3
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 7.2e-49 197.2 109 85.3
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 7.2e-49 197.2 109 85.3
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 9.4e-49 196.8 109 84.4
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 9.4e-49 196.8 109 83.5
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 9.4e-49 196.8 109 85.3
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 1.6e-48 196.1 109 83.5
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 1.6e-48 196.1 109 83.5
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 2.1e-48 195.7 109 85.3
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 2.7e-48 195.3 109 83.5
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 2.7e-48 195.3 109 83.5
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 2.7e-48 195.3 109 83.5
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 3.6e-48 194.9 109 84.4
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 3.6e-48 194.9 109 84.4
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 3.6e-48 194.9 109 84.4
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 6.1e-48 194.1 109 84.4
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 8.0e-48 193.7 109 82.6
Aqoxy180s006 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.3e-47 192.2 109 84.4
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.3e-47 192.2 109 84.4
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 3.0e-47 191.8 109 81.7
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 4.0e-47 191.4 109 80.7
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 8.8e-47 190.3 109 79.8
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 8.8e-47 190.3 109 81.7
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 1.5e-46 189.5 109 79.8
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 2.0e-46 189.1 109 80.7
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 3.4e-46 188.3 112 79.5
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 1.3e-45 186.4 108 80.6
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 6.3e-45 184.1 108 80.6
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 6.3e-45 184.1 136 69.1
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 4.5e-43 177.9 108 77.8
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 2.9e-42 175.3 106 76.4
CARHR222110 Cardamine hirsuta HOM05D002341 ORTHO05D003165 2.5e-41 172.2 108 76.9
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.0e-39 166.8 108 75.0
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 2.6e-38 162.2 107 74.8
C05p39600 Brassica napus HOM05D002341 ORTHO05D003165 7.0e-36 154.1 90 77.8
CDE02G3147 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 3.6e-32 141.7 75 86.7
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 1.8e-31 139.4 109 69.7
SGA_v2.0_scaffold332G48967 Striga asiatica HOM05D002341 ORTHO05D003165 8.9e-31 137.1 109 63.3
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.4e-23 113.2 109 56.9
Actinidia15979 Actinidia chinensis HOM05D002341 ORTHO05D003165 1.6e-11 73.2 110 44.5


User provided reference genes

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