Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3102 Fragaria x ananassa HOM05D002341 ORTHO05D020177 6.0e-82 307.4 147 100.0
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 4.6e-58 228.0 116 94.8
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.6e-58 228.0 116 94.8
FAN09G0817 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.7e-53 210.7 109 91.7
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 3.7e-47 191.8 123 74.8
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 5.7e-40 167.9 131 64.1
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 1.7e-39 166.4 131 64.1
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 2.2e-39 166.0 131 63.4
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 2.2e-39 166.0 131 63.4
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 3.7e-39 165.2 131 63.4
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 3.7e-39 165.2 131 63.4
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 4.8e-39 164.9 131 63.4
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 1.4e-38 163.3 131 62.6
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.4e-38 163.3 131 62.6
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.4e-38 163.3 131 62.6
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.4e-38 163.3 131 62.6
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.4e-38 163.3 131 62.6
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 1.4e-38 163.3 131 62.6
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 2.4e-38 162.5 134 61.9
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 2.4e-38 162.5 131 62.6
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 3.1e-38 162.2 131 62.6
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 3.1e-38 162.2 131 62.6
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 3.1e-38 162.2 131 62.6
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 3.1e-38 162.2 141 58.9
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 4.1e-38 161.8 134 61.9
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 4.1e-38 161.8 135 63.0
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 5.3e-38 161.4 131 61.8
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 5.3e-38 161.4 138 61.6
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 7.0e-38 161.0 140 60.0
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 7.0e-38 161.0 140 60.0
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 7.0e-38 161.0 140 60.0
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 7.0e-38 161.0 141 58.9
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 9.1e-38 160.6 141 58.9
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 1.2e-37 160.2 135 62.2
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 1.2e-37 160.2 140 59.3
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 2.0e-37 159.5 141 58.2
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 2.6e-37 159.1 131 61.1
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 4.5e-37 158.3 132 62.1
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 1.0e-36 157.1 143 58.0
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 1.0e-36 157.1 143 58.0
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 1.0e-36 157.1 140 59.3
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 1.3e-36 156.8 146 56.8
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 1.3e-36 156.8 121 63.6
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 1.3e-36 156.8 146 56.8
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 1.3e-36 156.8 141 59.6
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 2.2e-36 156.0 135 59.3
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 2.2e-36 156.0 135 60.7
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 3.8e-36 155.2 115 69.6
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 3.8e-36 155.2 140 58.6
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 3.8e-36 155.2 140 58.6
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 5.0e-36 154.8 109 67.9
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 5.0e-36 154.8 118 67.8
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 5.0e-36 154.8 109 67.9
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 5.0e-36 154.8 109 67.9
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 6.5e-36 154.5 140 58.6
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 8.5e-36 154.1 109 67.9
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 1.1e-35 153.7 113 66.4
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 1.1e-35 153.7 147 55.8
C04p60530 Brassica napus HOM05D002341 ORTHO05D003165 1.1e-35 153.7 146 56.2
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 1.1e-35 153.7 147 55.8
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 1.1e-35 153.7 118 66.9
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 1.5e-35 153.3 112 65.2
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.5e-35 153.3 111 67.6
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.9e-35 152.9 148 55.4
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.9e-35 152.9 106 67.9
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 1.9e-35 152.9 135 60.7
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 3.2e-35 152.1 138 59.4
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 3.2e-35 152.1 97 76.3
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 3.2e-35 152.1 145 57.9
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 3.2e-35 152.1 147 55.8
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 3.2e-35 152.1 113 69.0
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 3.2e-35 152.1 138 60.9
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 3.2e-35 152.1 135 60.0
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 4.2e-35 151.8 100 71.0
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 4.2e-35 151.8 140 58.6
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 4.2e-35 151.8 100 71.0
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 4.2e-35 151.8 147 56.5
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 5.5e-35 151.4 116 65.5
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 5.5e-35 151.4 116 65.5
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 5.5e-35 151.4 116 65.5
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 5.5e-35 151.4 100 70.0
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 5.5e-35 151.4 100 70.0
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 5.5e-35 151.4 100 70.0
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 7.2e-35 151.0 147 55.8
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 7.2e-35 151.0 147 55.8
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 7.2e-35 151.0 118 61.0
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 7.2e-35 151.0 147 55.8
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 7.2e-35 151.0 118 61.0
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 7.2e-35 151.0 148 55.4
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 7.2e-35 151.0 111 65.8
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 7.2e-35 151.0 147 56.5
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 7.2e-35 151.0 148 55.4
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 9.4e-35 150.6 100 69.0
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 9.4e-35 150.6 103 69.9
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.2e-34 150.2 138 60.1
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 1.2e-34 150.2 138 59.4
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 1.2e-34 150.2 135 59.3
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.2e-34 150.2 107 67.3
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 1.2e-34 150.2 107 67.3
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 1.2e-34 150.2 133 60.2
unitig_747.g21300 Utricularia gibba HOM05D002341 ORTHO05D003165 1.2e-34 150.2 114 64.9
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 1.6e-34 149.8 116 64.7
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 1.6e-34 149.8 147 55.8
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 1.6e-34 149.8 154 50.6
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.6e-34 149.8 110 67.3
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 2.1e-34 149.4 104 71.2
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 2.1e-34 149.4 97 75.3
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 2.1e-34 149.4 97 75.3
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 2.1e-34 149.4 97 75.3
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 2.1e-34 149.4 97 75.3
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 2.1e-34 149.4 97 74.2
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 2.1e-34 149.4 116 62.9
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 2.1e-34 149.4 107 71.0
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 2.1e-34 149.4 107 71.0
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 2.1e-34 149.4 97 75.3
CDE02G3147 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 2.7e-34 149.1 97 73.2
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 3.6e-34 148.7 115 65.2
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 3.6e-34 148.7 97 74.2
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 3.6e-34 148.7 111 67.6
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 6.1e-34 147.9 97 72.2
Cpa.g.sc67.48 Carica papaya HOM05D002341 ORTHO05D003165 8.0e-34 147.5 110 67.3
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.0e-33 147.1 97 73.2
Os05g0163250 Oryza sativa ssp. japonica HOM05D002341 ORTHO05D003165 1.0e-33 147.1 97 73.2
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 1.0e-33 147.1 97 73.2
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 1.4e-33 146.7 97 73.2
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 1.4e-33 146.7 115 66.1
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 2.3e-33 146.0 95 73.7
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 2.3e-33 146.0 114 64.9
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 3.0e-33 145.6 117 61.5
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 4.0e-33 145.2 112 67.9
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 8.8e-33 144.1 113 65.5
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 8.8e-33 144.1 114 63.2
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 8.8e-33 144.1 97 71.1
C05p39580 Brassica napus HOM05D002341 ORTHO05D020177 1.2e-32 143.7 109 64.2
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 1.2e-32 143.7 92 71.7
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 1.2e-32 143.7 161 50.3
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 1.2e-32 143.7 132 61.4
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 1.5e-32 143.3 107 64.5
C05p39590 Brassica napus HOM05D002341 ORTHO05D003165 2.0e-32 142.9 109 63.3
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 2.0e-32 142.9 121 62.0
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 3.3e-32 142.1 144 55.6
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 3.3e-32 142.1 92 70.7
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 3.3e-32 142.1 93 67.7
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 4.4e-32 141.7 149 54.4
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 5.7e-32 141.4 98 71.4
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 1.3e-31 140.2 96 68.8
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 1.7e-31 139.8 111 62.2
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 1.4e-30 136.7 98 67.3
Aqoxy180s004 Aquilegia oxysepala HOM05D002341 ORTHO05D017369 2.4e-30 136.0 92 63.0
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.4e-30 136.0 92 63.0
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 5.3e-30 134.8 110 61.8
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.2e-29 133.7 79 78.5
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 1.0e-28 130.6 97 66.0
FAN02G2298 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.2e-28 129.4 119 58.0
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 1.5e-27 126.7 93 62.4
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 1.2e-26 123.6 118 51.7
TAR383G0612 Trochodendron aralioides HOM05D002341 ORTHO05D020177 1.7e-23 113.2 112 56.2
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 6.3e-23 111.3 106 55.7
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 1.1e-22 110.5 60 83.3
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 8.6e-20 100.9 110 49.1
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 8.6e-20 100.9 49 89.8
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 2.8e-18 95.9 107 50.5
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 8.9e-17 90.9 45 86.7
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 1.2e-16 90.5 45 88.9
SGA_v2.0_scaffold332G48967 Striga asiatica HOM05D002341 ORTHO05D003165 6.6e-12 74.7 65 55.4
CAN.G366.3 Capsicum annuum HOM05D001717 ORTHO05D022168 3.7e-07 58.9 145 34.5
CAN.G32.13 Capsicum annuum HOM05D002341 ORTHO05D020177 2.4e-06 56.2 66 47.0
CAN.G2186.1 Capsicum annuum HOM05D002341 ORTHO05D020177 4.1e-06 55.5 59 50.8


User provided reference genes

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