Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 0.0e+00 1570.4 807 100.0
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 0.0e+00 1239.2 811 82.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.5e-304 1049.3 793 67.1
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 3.2e-302 1041.6 812 65.3
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 1.3e-298 1029.6 815 65.8
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 4.5e-296 1021.1 826 63.7
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.0e-295 1020.0 792 65.4
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.0e-292 1010.0 806 65.4
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.8e-292 1009.2 767 66.6
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.4e-289 999.6 776 64.6
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 6.5e-287 990.7 813 62.2
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 8.5e-287 990.3 803 64.1
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.5e-286 988.8 803 64.1
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.5e-286 988.8 743 66.5
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.5e-286 988.8 761 64.1
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 3.2e-286 988.4 803 64.1
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.6e-285 986.1 835 62.0
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 6.1e-285 984.2 662 70.4
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.0e-284 983.4 761 63.7
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 3.0e-284 981.9 819 63.2
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.5e-283 979.5 747 66.0
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.0e-283 979.2 742 64.2
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 3.7e-282 974.9 736 66.6
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 1.8e-281 972.6 808 63.5
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 4.1e-281 971.5 823 59.7
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.7e-280 967.2 742 63.3
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.7e-279 966.1 742 64.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 7.2e-278 960.7 839 59.4
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 2.3e-276 955.7 814 60.1
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 4.4e-275 951.4 840 60.2
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.1e-273 946.8 741 65.0
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 5.3e-273 944.5 734 63.4
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 5.3e-273 944.5 743 61.6
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 7.0e-273 944.1 773 63.6
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 3.5e-272 941.8 682 65.5
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 5.9e-272 941.0 767 62.2
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.9e-271 938.7 588 85.5
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.9e-270 936.0 852 58.2
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 5.5e-270 934.5 755 62.5
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 2.7e-269 932.2 782 60.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 8.0e-269 930.6 794 60.6
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.8e-268 929.5 752 63.7
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.2e-267 926.8 810 59.5
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 2.0e-267 926.0 680 64.7
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 4.4e-267 924.9 797 58.7
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.7e-266 922.9 785 60.4
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.7e-266 921.8 775 62.8
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 3.7e-266 921.8 660 65.8
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 8.2e-266 920.6 757 59.8
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 2.4e-265 919.1 750 63.1
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 2.4e-265 919.1 687 64.0
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 5.3e-265 917.9 773 59.9
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.0e-264 916.0 694 63.7
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.1e-261 906.0 756 61.5
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 3.5e-256 888.6 793 56.7
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 1.0e-255 887.1 802 57.1
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.3e-255 886.7 831 56.3
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.9e-254 882.9 801 56.9
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 4.0e-252 875.2 828 55.9
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 8.8e-252 874.0 761 58.2
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.6e-251 872.5 785 56.8
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 5.7e-251 871.3 798 55.6
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 2.8e-250 869.0 762 57.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 8.3e-250 867.5 692 62.6
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 4.1e-249 865.1 755 58.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 9.2e-249 864.0 705 60.0
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.6e-248 863.2 809 56.9
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 3.5e-248 862.1 834 55.4
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.3e-247 860.1 770 56.2
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 5.0e-247 858.2 818 53.7
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 9.5e-246 854.0 820 54.1
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.6e-245 853.2 750 57.3
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 4.7e-245 851.7 737 57.8
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.7e-242 843.2 834 54.6
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.0e-240 836.3 737 56.9
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 5.9e-240 834.7 770 57.5
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 7.8e-240 834.3 786 55.1
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 1.7e-239 833.2 708 58.6
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.9e-238 829.7 740 56.5
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.9e-238 829.7 740 56.5
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.9e-238 829.7 740 56.5
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.1e-236 822.4 622 64.5
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 5.2e-236 821.6 654 62.1
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 2.6e-235 819.3 670 59.1
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 4.4e-235 818.5 758 55.0
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 7.5e-235 817.8 723 57.1
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 3.3e-230 802.4 746 53.8
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 1.2e-229 800.4 659 60.8
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 3.2e-225 785.8 726 55.2
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.5e-224 782.3 699 56.4
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 4.0e-220 768.8 623 62.0
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.5e-219 766.9 761 52.4
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 1.1e-217 760.8 765 53.1
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 9.2e-217 757.7 679 54.3
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 7.8e-216 754.6 670 56.3
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 9.6e-214 747.7 669 54.7
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 8.4e-210 734.6 609 58.8
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.6e-208 728.8 543 65.7
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 4.5e-171 605.9 685 44.2
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 5.1e-167 592.4 642 48.3
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 7.2e-161 572.0 798 42.6
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.0e-146 525.0 465 57.4
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 6.3e-141 505.8 419 60.1
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 6.8e-119 432.6 534 46.4
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.8e-107 392.5 649 39.3
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.7e-101 374.8 306 63.7
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 6.6e-98 362.8 493 44.8
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 2.4e-87 327.8 704 31.2
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.1e-84 316.2 416 49.3
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-79 301.6 320 52.5
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 3.4e-78 297.4 388 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 5.5e-68 263.5 647 28.3
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.9e-65 255.0 651 27.8
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.4e-58 232.3 650 26.0
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.0e-57 228.4 194 58.2
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 3.6e-51 207.6 654 24.8
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 3.8e-45 187.6 178 56.7
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 5.5e-44 183.7 165 59.4
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.5e-41 175.6 649 24.2
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-32 144.8 194 42.3
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 9.8e-25 119.8 182 44.0
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 6.3e-16 90.5 192 37.5
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 1.1e-15 89.7 677 17.6
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 9.2e-15 86.7 61 62.3
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.1e-12 79.7 51 70.6
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 7.3e-12 77.0 53 69.8
Nitab4.5_0004523g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.6e-11 75.9 236 26.7
PGR031G1955 Punica granatum HOM05D000001 ORTHO05D000003 3.6e-11 74.7 311 24.1
Nitab4.5_0001788g0050 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.5e-09 69.3 236 26.3
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 7.5e-09 67.0 333 21.6
MD07G1097800 Malus domestica HOM05D000300 ORTHO05D000383 2.2e-08 65.5 252 24.2
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 6.4e-08 63.9 197 25.9
HanXRQChr10g0289391 Helianthus annuus HOM05D002649 ORTHO05D002838 1.1e-07 63.2 264 22.7
AagrBONN_evm.TU.Sc2ySwM_368.674 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-07 62.8 252 22.6
Sc06g0001980 Simmondsia chinensis HOM05D000001 ORTHO05D000003 1.4e-07 62.8 304 22.0
TAR633G0691 Trochodendron aralioides HOM05D016421 ORTHO05D018216 1.9e-07 62.4 336 23.2
Lsat_1_v5_gn_9_29760 Lactuca sativa HOM05D002649 ORTHO05D002838 2.4e-07 62.0 273 21.6
MELO3C017551.2 Cucumis melo HOM05D000891 ORTHO05D000761 7.0e-07 60.5 265 22.6
Thhalv10015264m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 7.0e-07 60.5 313 23.3
MD02G1219200 Malus domestica HOM05D000300 ORTHO05D000383 7.0e-07 60.5 252 24.2
Peaxi162Scf00592g00464 Petunia axillaris HOM05D000300 ORTHO05D000383 7.0e-07 60.5 238 24.4
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 9.2e-07 60.1 166 24.7
Hma1.2p1_1666F.1_g296530 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 9.2e-07 60.1 140 27.1
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 9.2e-07 60.1 156 26.9
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.2e-06 59.7 210 24.8
Atru.chr2.239 Acer truncatum HOM05D000001 ORTHO05D000003 1.6e-06 59.3 210 22.9
CiPaw.13G024800 Carya illinoinensis HOM05D000300 ORTHO05D000383 1.6e-06 59.3 214 24.8
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.6e-06 59.3 156 26.9
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 2.7e-06 58.5 200 25.5
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 2.7e-06 58.5 156 26.9
CSS0004744 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 3.5e-06 58.2 232 25.4
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 3.5e-06 58.2 231 24.2
CsaV3_4G005170 Cucumis sativus L. HOM05D000891 ORTHO05D000761 3.5e-06 58.2 268 22.8
DCAR_002592 Daucus carota HOM05D000001 ORTHO05D000003 3.5e-06 58.2 207 23.7
HanXRQChr14g0440391 Helianthus annuus HOM05D000891 ORTHO05D000761 3.5e-06 58.2 304 22.7
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 3.5e-06 58.2 156 26.3
TWI63G0633 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 3.5e-06 58.2 257 24.9
TAR629G3207 Trochodendron aralioides HOM05D000001 ORTHO05D006025 3.5e-06 58.2 303 24.1
EL10Ac7g16019 Beta vulgaris HOM05D006354 ORTHO05D007773 4.6e-06 57.8 160 25.0
RcHm_v2.0_Chr3g0477851 Rosa chinensis HOM05D000300 ORTHO05D000383 4.6e-06 57.8 207 24.6
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 57.4 342 18.7
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 57.4 238 20.6
CAN.G992.10 Capsicum annuum HOM05D000300 ORTHO05D000383 6.0e-06 57.4 238 24.8
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 6.0e-06 57.4 295 22.7
Sopen01g032900 Solanum pennellii HOM05D000300 ORTHO05D000383 6.0e-06 57.4 238 23.5
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 6.0e-06 57.4 156 26.9
CSS0005763 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 7.8e-06 57.0 232 24.1
CDE10G1370 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 7.8e-06 57.0 287 22.6


User provided reference genes

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