Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 0.0e+00 1110.1 575 100.0
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.5e-272 941.8 588 85.5
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.8e-206 723.0 591 70.9
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 7.3e-200 701.0 564 64.0
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.8e-198 696.4 561 63.5
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 4.0e-198 695.3 561 64.0
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 2.6e-197 692.6 560 63.4
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 2.9e-196 689.1 564 64.0
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 2.7e-194 682.6 565 63.0
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.3e-193 679.5 564 63.8
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 3.0e-193 679.1 564 63.8
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 8.7e-193 677.6 510 66.5
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.6e-191 673.3 603 60.5
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.1e-191 672.9 600 60.0
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 3.6e-191 672.2 553 62.6
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 4.4e-189 665.2 591 60.1
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 5.8e-189 664.8 514 65.0
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 2.9e-188 662.5 570 60.4
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 3.8e-188 662.1 497 65.8
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.2e-187 659.1 530 63.4
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 4.2e-187 658.7 581 60.6
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 2.1e-186 656.4 462 68.0
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 3.5e-186 655.6 530 62.8
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.3e-185 652.9 594 56.4
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 3.9e-185 652.1 561 61.1
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.9e-184 649.8 509 64.2
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.9e-184 649.8 563 60.6
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.3e-184 648.7 530 62.3
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 9.6e-184 647.5 519 61.3
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.6e-183 646.7 530 63.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 2.1e-183 646.4 566 59.2
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 4.8e-183 645.2 569 58.7
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 4.8e-183 645.2 567 61.0
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.8e-182 643.3 543 61.1
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.2e-181 640.6 516 63.2
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 9.9e-181 637.5 487 65.5
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 1.7e-180 636.7 569 58.5
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 3.8e-180 635.6 451 67.0
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 4.2e-179 632.1 566 58.7
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 7.1e-179 631.3 561 57.2
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 3.5e-178 629.0 533 61.5
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 4.6e-178 628.6 552 59.2
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.8e-177 626.7 556 59.0
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 8.7e-177 624.4 464 64.9
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 2.5e-176 622.9 571 56.4
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 2.5e-176 622.9 448 66.1
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.6e-175 620.2 568 56.5
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 3.7e-175 619.0 463 65.0
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 6.2e-175 618.2 536 60.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.1e-174 617.5 594 56.6
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 1.4e-174 617.1 506 60.1
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.8e-174 616.7 512 59.4
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.6e-173 612.8 572 57.9
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.0e-172 610.9 522 60.0
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 4.2e-171 605.5 565 55.6
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 8.7e-169 597.8 474 61.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 3.7e-167 592.4 562 55.2
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.8e-166 590.1 557 55.8
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.0e-165 586.6 558 56.3
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 7.6e-165 584.7 539 56.8
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 1.3e-164 583.9 525 56.6
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.7e-164 583.6 520 57.7
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 5.0e-164 582.0 593 52.1
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 5.0e-164 582.0 526 57.6
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 8.4e-164 581.3 570 54.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 2.5e-163 579.7 444 63.7
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 7.2e-163 578.2 482 58.5
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.6e-162 577.0 580 51.9
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 4.6e-162 575.5 470 59.8
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 7.9e-162 574.7 469 59.7
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.0e-161 574.3 560 53.8
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.8e-161 573.5 533 55.0
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.3e-161 573.2 519 54.7
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 8.7e-161 571.2 577 52.3
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.9e-160 570.1 469 58.6
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.9e-160 570.1 469 58.6
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.9e-160 570.1 469 58.6
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 2.5e-160 569.7 569 52.7
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 4.3e-160 568.9 526 54.9
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 9.7e-160 567.8 469 58.6
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 9.7e-160 567.8 526 54.8
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 8.2e-159 564.7 516 55.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 1.8e-158 563.5 472 58.9
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 5.0e-156 555.4 565 54.3
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.9e-155 553.5 539 54.7
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 9.4e-155 551.2 512 55.3
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 2.7e-154 549.7 508 54.9
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 3.0e-153 546.2 557 52.2
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 4.8e-151 538.9 523 52.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 7.7e-149 531.6 545 51.6
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.0e-148 531.2 504 52.2
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 3.8e-148 529.3 475 57.1
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 5.0e-148 528.9 461 56.4
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.4e-147 527.3 411 62.5
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 5.7e-144 515.4 411 61.6
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 7.4e-144 515.0 458 56.1
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 1.1e-139 501.1 405 61.2
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.7e-135 487.3 376 64.6
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 8.5e-124 448.4 481 45.7
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.7e-119 434.1 378 57.7
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.0e-117 427.2 521 46.3
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.1e-115 421.4 513 48.0
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 4.3e-107 392.9 384 54.7
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.6e-101 372.9 304 61.2
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 2.5e-99 367.1 482 45.4
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.6e-98 364.4 406 52.7
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 3.6e-98 363.2 306 61.4
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 5.2e-89 332.8 318 55.3
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 4.1e-86 323.2 384 50.5
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 3.5e-61 240.4 225 54.7
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.8e-58 229.9 205 56.6
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.1e-49 200.7 398 32.7
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 2.1e-45 188.0 180 56.1
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.3e-44 184.5 163 55.8
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 2.4e-41 174.5 392 27.8
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.7e-39 168.3 396 27.8
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.1e-38 165.6 272 34.2
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 6.1e-37 159.8 220 39.1
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 6.1e-37 159.8 244 38.1
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.2e-24 119.0 179 43.6
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.3e-23 115.5 183 37.2
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 5.3e-17 93.6 192 38.5
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 6.5e-15 86.7 61 62.3
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 2.3e-12 78.2 50 70.0
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.5e-11 75.5 52 69.2
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 4.1e-09 67.4 236 27.1
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 2.0e-08 65.1 273 25.6
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 4.5e-08 63.9 225 23.6
Nitab4.5_0004523g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 5.0e-07 60.5 236 22.9
PGR031G1955 Punica granatum HOM05D000001 ORTHO05D000003 5.0e-07 60.5 277 23.5
CsaV3_4G005170 Cucumis sativus L. HOM05D000891 ORTHO05D000761 6.5e-07 60.1 226 27.0
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 1.5e-06 58.9 358 22.1
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.9e-06 58.5 199 24.6
Nitab4.5_0013032g0040 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.9e-06 58.5 226 26.1
Aqoxy3G04283 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 3.2e-06 57.8 243 25.1
AL7G42900 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 3.2e-06 57.8 314 23.9
MELO3C017551.2 Cucumis melo HOM05D000891 ORTHO05D000761 4.2e-06 57.4 236 25.0
AT4G13650 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 5.5e-06 57.0 314 23.9
Manes.09G178500 Manihot esculenta HOM05D000001 ORTHO05D000003 5.5e-06 57.0 227 24.2
AagrBONN_evm.TU.Sc2ySwM_117.3815__3816 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.2e-06 56.6 345 21.4
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 7.2e-06 56.6 208 22.1
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 7.2e-06 56.6 202 24.3
Sp7g11360 Schrenkiella parvula HOM05D000001 ORTHO05D000003 7.2e-06 56.6 319 23.8


User provided reference genes

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