Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 0.0e+00 1379.4 709 100.0
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 0.0e+00 1242.3 811 82.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 2.1e-236 822.8 788 55.8
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 3.2e-229 798.9 805 53.3
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 4.2e-229 798.5 808 55.0
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.6e-228 796.6 804 54.2
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 3.5e-228 795.4 795 55.5
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 1.0e-227 793.9 834 52.9
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 3.9e-227 792.0 786 54.8
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 9.6e-226 787.3 712 58.0
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 2.0e-223 779.6 791 52.8
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.7e-222 776.5 814 52.3
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.4e-221 772.7 808 53.8
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 3.2e-221 772.3 808 53.8
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 7.8e-220 767.7 761 53.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.3e-219 766.1 744 54.3
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.0e-219 765.8 777 52.3
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 3.9e-219 765.4 823 52.7
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 3.3e-218 762.3 758 52.4
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.3e-217 760.4 806 53.1
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.6e-217 760.0 663 57.5
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.6e-217 760.0 755 53.6
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 3.6e-217 758.8 747 54.8
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 4.8e-217 758.4 836 51.1
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 8.1e-217 757.7 747 52.7
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.7e-214 750.0 758 51.6
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 5.4e-213 745.0 758 51.8
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 1.2e-212 743.8 809 51.9
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 4.3e-210 735.3 804 50.0
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.3e-209 733.8 757 53.5
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.1e-208 730.7 813 49.3
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 9.0e-208 727.6 805 50.6
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.4e-207 725.7 754 53.3
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.4e-207 725.7 797 50.6
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 4.5e-207 725.3 768 51.6
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.3e-206 723.8 591 70.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.1e-205 720.7 795 50.4
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.4e-205 720.3 772 52.3
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 7.1e-205 718.0 744 51.1
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 6.0e-204 714.9 754 50.3
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 6.0e-204 714.9 813 49.8
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 6.7e-203 711.4 749 49.7
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 6.7e-203 711.4 763 50.5
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.1e-202 710.7 814 49.3
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 9.6e-202 707.6 815 49.8
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 6.9e-200 701.4 680 52.6
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 2.6e-199 699.5 805 48.1
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.6e-199 699.5 776 51.2
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 1.7e-198 696.8 660 52.9
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 3.8e-198 695.7 742 49.7
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 2.5e-197 693.0 800 47.5
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 7.1e-197 691.4 695 51.7
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 1.8e-195 686.8 742 48.8
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 4.3e-194 682.2 773 49.5
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 3.7e-193 679.1 838 46.2
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.4e-192 677.2 729 49.9
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.8e-192 676.8 805 47.5
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 2.6e-191 672.9 800 46.6
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.3e-190 670.6 799 46.4
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.7e-190 670.2 761 47.8
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 2.9e-190 669.5 795 46.7
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 2.3e-187 659.8 769 48.1
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.1e-186 657.5 765 48.2
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.5e-186 657.1 716 47.9
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.5e-186 656.4 705 48.7
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 3.3e-186 656.0 709 48.4
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 5.7e-186 655.2 790 47.1
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 7.4e-186 654.8 692 51.0
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.8e-184 650.2 748 47.2
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 3.4e-183 646.0 819 44.7
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 4.5e-183 645.6 768 45.8
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.4e-181 640.6 805 46.0
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.1e-180 635.2 481 65.1
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.8e-179 633.6 726 47.0
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 3.9e-179 632.5 758 46.8
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.9e-179 632.5 482 63.1
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 1.1e-176 624.4 757 47.0
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 1.1e-176 624.4 669 48.0
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.6e-175 619.8 726 46.1
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 7.7e-175 618.2 729 46.0
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 7.7e-175 618.2 729 46.0
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 7.7e-175 618.2 729 46.0
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 1.7e-174 617.1 684 48.7
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.6e-172 610.5 739 45.7
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 2.7e-172 609.8 659 49.5
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 4.7e-172 609.0 680 47.1
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 3.1e-168 596.3 750 44.3
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 4.5e-167 592.4 659 49.0
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.3e-166 590.9 725 44.3
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 3.2e-165 586.3 756 44.0
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 2.0e-162 577.0 689 46.2
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 4.2e-157 559.3 765 42.0
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 3.6e-156 556.2 678 44.0
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.6e-154 550.1 784 42.2
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.4e-154 549.7 669 44.5
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 5.4e-152 542.3 624 48.4
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 7.7e-151 538.5 670 42.7
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 6.6e-150 535.4 470 55.7
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 3.6e-148 529.6 465 57.8
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.5e-122 444.5 690 41.4
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.3e-118 431.4 649 36.7
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 2.5e-101 374.0 696 34.8
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 2.2e-73 281.2 428 40.7
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 2.9e-65 254.2 201 62.2
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.5e-64 251.1 532 33.6
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.7e-57 228.4 652 26.5
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 3.8e-49 200.7 438 33.1
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.7e-45 186.8 664 27.1
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.4e-43 181.4 642 24.9
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 4.2e-40 170.6 160 53.8
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 4.7e-39 167.2 664 23.0
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.5e-37 162.2 648 23.1
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.3e-36 159.1 212 43.9
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 2.4e-35 154.8 165 53.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 5.0e-33 147.1 194 42.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.3e-32 143.3 383 33.7
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 9.5e-32 142.9 663 22.0
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.9e-28 130.6 578 23.0
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 3.0e-25 121.3 331 30.8
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 5.6e-24 117.1 394 29.9
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 9.5e-24 116.3 180 43.3
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 9.5e-16 89.7 192 38.0
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 1.8e-14 85.5 61 62.3
Nitab4.5_0004523g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.2e-13 82.8 302 26.2
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 3.7e-12 77.8 241 22.0
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 6.4e-12 77.0 50 70.0
PGR031G1955 Punica granatum HOM05D000001 ORTHO05D000003 4.1e-11 74.3 261 26.1
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 4.1e-11 74.3 52 69.2
EL10Ac3g07246 Beta vulgaris HOM05D002649 ORTHO05D002838 3.5e-10 71.2 211 25.6
Nitab4.5_0001788g0050 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.0e-09 69.7 285 24.9
CDE10G1370 Ceratophyllum demersum HOM05D000300 ORTHO05D000383 3.9e-09 67.8 376 22.3
CAN.G992.10 Capsicum annuum HOM05D000300 ORTHO05D000383 1.1e-08 66.2 297 24.2
CSS0004744 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 3.3e-08 64.7 305 23.9
TWI63G0633 Tripterygium wilfordii HOM05D000300 ORTHO05D000383 3.3e-08 64.7 263 24.7
Thhalv10004079m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 4.3e-08 64.3 312 23.1
Sopen01g032900 Solanum pennellii HOM05D000300 ORTHO05D000383 4.3e-08 64.3 305 23.0
Aa31LG3G14100 Aethionema arabicum HOM05D000300 ORTHO05D000383 5.6e-08 63.9 306 21.2
CSS0005763 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D000383 5.6e-08 63.9 305 22.6
BraA02t08840Z Brassica rapa HOM05D000300 ORTHO05D000383 1.6e-07 62.4 304 21.7
BraA09t36168Z Brassica rapa HOM05D000300 ORTHO05D000383 1.6e-07 62.4 270 23.0
PGSC0003DMG402001782 Solanum tuberosum HOM05D000300 ORTHO05D000383 1.6e-07 62.4 304 23.4
Sp2g20680 Schrenkiella parvula HOM05D000300 ORTHO05D000383 2.1e-07 62.0 299 23.7
RcHm_v2.0_Chr3g0477851 Rosa chinensis HOM05D000300 ORTHO05D000383 3.6e-07 61.2 192 25.5
Atru.chr2.239 Acer truncatum HOM05D000001 ORTHO05D000003 4.7e-07 60.8 223 23.3
AagrBONN_evm.TU.Sc2ySwM_117.4077 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.7e-07 60.8 281 19.9
AT5G27460 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 4.7e-07 60.8 311 24.4
AagrBONN_evm.TU.Sc2ySwM_344.1738 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.2e-07 60.5 191 22.5
HanXRQChr10g0289391 Helianthus annuus HOM05D002649 ORTHO05D002838 8.1e-07 60.1 211 24.2
Hma1.2p1_1666F.1_g296530 Hydrangea macrophylla HOM05D000300 ORTHO05D000383 8.1e-07 60.1 143 26.6
Peaxi162Scf00592g00464 Petunia axillaris HOM05D000300 ORTHO05D000383 8.1e-07 60.1 238 24.4
A09p05290 Brassica napus HOM05D000300 ORTHO05D000383 1.1e-06 59.7 270 22.6
C02p58130 Brassica napus HOM05D000300 ORTHO05D000383 1.1e-06 59.7 304 21.7
TAR627G0816 Trochodendron aralioides HOM05D000001 ORTHO05D011563 1.1e-06 59.7 255 22.7
AagrBONN_evm.TU.Sc2ySwM_368.674 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.4e-06 59.3 246 22.8
BcaC04g23677 Brassica carinata HOM05D000300 ORTHO05D000383 1.4e-06 59.3 310 22.3
C09p05770 Brassica napus HOM05D000300 ORTHO05D000383 1.4e-06 59.3 310 22.3
BolC9t53504H Brassica oleracea HOM05D000300 ORTHO05D000383 1.4e-06 59.3 310 22.3
BraA10t42393Z Brassica rapa HOM05D000300 ORTHO05D000383 1.4e-06 59.3 326 21.8
CARHR186070 Cardamine hirsuta HOM05D000300 ORTHO05D000383 1.8e-06 58.9 293 22.9
Glyma.10G000600 Glycine max HOM05D002649 ORTHO05D002838 1.8e-06 58.9 191 24.1
A02p38640 Brassica napus HOM05D000300 ORTHO05D000383 2.3e-06 58.5 299 24.1
SalBow5G0236 Salvia bowleyana HOM05D000001 ORTHO05D000003 2.3e-06 58.5 177 24.9
TWI36G1094 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 2.3e-06 58.5 260 23.8
C05p01170 Brassica napus HOM05D000300 ORTHO05D000383 3.1e-06 58.2 326 21.5
Ciclev10000386m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.1e-06 58.2 257 23.3
A10p01140 Brassica napus HOM05D000300 ORTHO05D000383 4.0e-06 57.8 326 21.5
DCAR_002592 Daucus carota HOM05D000001 ORTHO05D000003 4.0e-06 57.8 179 25.1
AagrBONN_evm.TU.Sc2ySwM_368.2160 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.2e-06 57.4 234 23.1
BcaC05g24618 Brassica carinata HOM05D000300 ORTHO05D000383 5.2e-06 57.4 326 21.5
AagrBONN_evm.TU.Sc2ySwM_368.33 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-06 57.0 287 23.0
Cfa000434 Carpinus fangiana HOM05D000300 ORTHO05D000383 6.8e-06 57.0 266 25.2
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.9e-06 56.6 219 21.9
EL10Ac7g16019 Beta vulgaris HOM05D006354 ORTHO05D007773 8.9e-06 56.6 160 25.0
Solyc09g082450.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 8.9e-06 56.6 168 27.4
HPP92_012951 Vanilla planifolia HOM05D002649 ORTHO05D002838 8.9e-06 56.6 187 22.5


User provided reference genes

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