Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 1.6e-208 729.2 358 100.0
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 2.3e-188 662.1 361 88.9
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 8.9e-188 660.2 358 89.4
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 3.4e-187 658.3 349 91.4
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.2e-186 655.6 359 89.1
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 2.9e-186 655.2 356 89.9
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 1.1e-185 653.3 347 90.8
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 1.1e-185 653.3 353 89.5
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.4e-185 652.1 358 89.1
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 3.2e-185 651.7 358 87.7
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 4.1e-185 651.4 358 87.2
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.6e-184 649.4 353 89.0
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.1e-184 649.0 349 90.3
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.5e-184 648.3 349 90.3
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 3.5e-184 648.3 349 90.3
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 6.0e-184 647.5 349 89.1
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 3.9e-183 644.8 358 88.3
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 6.6e-183 644.0 354 88.7
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 8.6e-183 643.7 358 88.0
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 8.6e-183 643.7 356 87.4
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 1.5e-182 642.9 358 87.2
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 1.9e-182 642.5 349 88.3
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.9e-182 642.5 358 88.0
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 5.6e-182 641.0 354 87.9
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 6.2e-181 637.5 357 85.7
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 8.1e-181 637.1 352 87.2
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 1.8e-180 636.0 360 85.8
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.3e-180 635.6 359 86.6
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 5.2e-180 634.4 354 87.6
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 5.2e-180 634.4 354 87.6
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 8.9e-180 633.6 372 84.1
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 3.4e-179 631.7 350 87.7
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.4e-179 631.7 358 85.8
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.4e-179 631.7 344 89.0
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 3.4e-179 631.7 349 86.0
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.4e-179 631.3 358 85.2
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 5.8e-179 630.9 342 87.7
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 1.3e-178 629.8 359 85.2
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 2.9e-178 628.6 347 87.0
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 1.1e-177 626.7 342 87.4
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.7e-175 619.4 358 84.6
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 5.1e-175 617.8 372 80.9
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.9e-174 615.9 334 90.4
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.9e-174 615.9 361 84.8
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.9e-174 615.9 400 77.0
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 3.3e-174 615.1 411 74.9
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 7.3e-174 614.0 382 78.8
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.8e-172 609.4 358 84.1
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.8e-172 609.4 358 84.4
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.2e-171 606.7 365 80.8
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.2e-171 606.7 350 83.1
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 1.5e-171 606.3 344 84.9
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.0e-171 605.9 385 78.4
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 4.4e-171 604.7 335 87.2
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 5.8e-171 604.4 344 84.6
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 5.8e-171 604.4 344 84.6
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 9.9e-171 603.6 378 80.2
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.3e-170 603.2 344 84.9
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 2.2e-170 602.4 345 86.1
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 4.9e-170 601.3 394 76.1
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 7.1e-169 597.4 319 89.3
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 9.3e-169 597.0 374 80.7
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 9.3e-169 597.0 363 80.4
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 9.3e-169 597.0 349 83.4
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 2.7e-168 595.5 356 80.3
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 7.8e-168 594.0 359 81.1
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 7.8e-168 594.0 349 83.1
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 4.3e-166 588.2 360 80.0
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 7.3e-166 587.4 360 80.3
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.5e-163 579.7 350 81.4
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 7.6e-163 577.4 360 80.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 2.2e-162 575.9 406 72.4
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 9.3e-161 570.5 350 81.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 1.2e-160 570.1 350 79.7
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 6.0e-160 567.8 444 66.7
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 6.7e-159 564.3 358 79.1
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.1e-158 563.5 361 78.7
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 7.4e-158 560.8 326 83.4
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.6e-157 559.7 312 86.2
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 2.4e-156 555.8 370 76.2
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.2e-155 553.5 323 80.2
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.8e-155 551.2 333 83.5
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 1.4e-153 546.6 336 77.1
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.2e-153 545.4 359 77.4
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.0e-151 540.4 320 82.5
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 1.3e-149 533.5 336 75.0
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 2.8e-149 532.3 349 78.5
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 5.5e-145 518.1 362 73.5
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.2e-144 516.9 350 74.9
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.0e-143 513.8 380 68.9
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 3.0e-143 512.3 361 73.4
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.9e-142 509.6 356 71.3
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 2.4e-140 502.7 362 72.4
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 2.0e-139 499.6 305 74.8
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 8.5e-138 494.2 350 71.4
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 7.4e-134 481.1 304 74.0
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 5.5e-129 464.9 289 78.2
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 2.7e-128 462.6 255 85.9
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 5.1e-127 458.4 347 67.1
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 2.2e-122 443.0 321 68.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.7e-120 436.0 238 87.8
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 3.9e-119 432.2 324 62.0
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 8.8e-119 431.0 325 64.6
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.1e-118 430.6 362 64.6
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 2.6e-118 429.5 231 89.6
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.1e-116 424.1 321 67.9
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.2e-114 416.4 239 84.5
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 1.1e-113 414.1 217 90.8
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 4.2e-113 412.1 219 89.0
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 4.2e-113 412.1 219 89.0
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.4e-111 407.1 214 91.1
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 8.8e-111 404.4 231 84.0
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 8.8e-111 404.4 345 63.8
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 2.2e-106 389.8 217 86.6
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 5.2e-103 378.6 232 81.9
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.6e-99 367.1 439 46.7
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 7.3e-81 305.1 233 67.0
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 4.4e-70 269.2 195 70.8
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 4.7e-64 249.2 211 62.6
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 6.6e-58 228.8 345 42.0
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 8.7e-58 228.4 267 50.9
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 5.2e-55 219.2 129 82.9
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 4.8e-48 196.1 117 81.2
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 1.8e-47 194.1 114 80.7
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 4.6e-43 179.5 122 71.3
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 9.0e-39 165.2 101 78.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 9.9e-38 161.8 94 79.8
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 8.4e-37 158.7 83 89.2
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.1e-34 149.4 121 64.5
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.2e-28 129.8 95 70.5
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 7.1e-28 129.0 70 91.4
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.8e-23 114.4 77 72.7
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 2.6e-22 110.5 64 79.7
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.1e-20 105.1 69 73.9
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.7e-18 95.9 57 77.2
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 9.7e-17 92.0 60 75.0
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.2e-11 75.1 77 53.2
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 1.6e-11 74.7 54 70.4
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 3.0e-10 70.5 93 46.2
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.4e-09 66.6 34 79.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 5.7e-09 66.2 44 70.5
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 9.7e-09 65.5 31 90.3
PRCOL_00007051 Prasinoderma coloniale HOM05D002604 ORTHO05D003070 1.5e-06 58.2 188 26.6
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 2.6e-06 57.4 38 71.1
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 2.6e-06 57.4 38 71.1


User provided reference genes

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