Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 4.9e-254 880.9 544 100.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.0e-203 713.8 547 77.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.0e-200 700.7 545 78.3
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.0e-198 697.2 545 81.1
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.4e-197 693.3 547 77.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.9e-195 685.3 546 73.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 4.3e-194 681.8 549 76.7
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.1e-192 675.6 546 72.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.3e-192 674.9 546 76.4
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.2e-191 673.7 547 75.1
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.9e-190 669.1 543 75.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.1e-189 667.2 545 74.3
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.1e-188 661.4 559 70.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.5e-183 645.6 551 71.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-182 642.9 545 73.9
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 5.0e-182 641.7 548 72.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.7e-180 636.0 548 67.7
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.1e-178 630.6 546 74.7
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.4e-178 627.9 596 70.6
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.4e-178 627.9 596 70.6
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 2.8e-177 625.9 547 67.5
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 5.3e-176 621.7 549 72.7
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 3.5e-175 619.0 554 69.0
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 4.5e-175 618.6 549 67.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.7e-174 616.7 559 67.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 5.5e-173 611.7 549 73.8
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 1.6e-172 610.1 551 68.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 8.0e-172 607.8 549 70.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 1.4e-171 607.1 546 66.7
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 5.2e-171 605.1 549 68.5
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 5.7e-170 601.7 548 67.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 9.7e-170 600.9 558 71.5
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.2e-169 599.7 558 71.0
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.7e-169 599.0 549 70.7
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.8e-169 598.6 534 68.9
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 6.3e-169 598.2 550 67.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.1e-168 595.5 558 71.5
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 9.1e-168 594.3 583 67.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 2.7e-167 592.8 545 66.2
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.7e-167 592.8 560 72.3
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.0e-166 590.9 547 67.3
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.7e-166 590.1 542 67.5
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.7e-166 590.1 546 66.3
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.8e-166 589.0 550 65.8
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 3.2e-165 585.9 559 67.6
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 2.1e-164 583.2 548 69.7
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 3.6e-164 582.4 546 65.8
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.3e-163 579.7 546 67.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.0e-163 579.3 550 64.5
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.6e-162 576.2 497 67.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 2.6e-162 576.2 544 65.8
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.7e-161 573.5 558 65.9
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-161 573.2 560 66.6
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.8e-161 572.8 572 67.3
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.1e-160 570.9 562 68.5
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.4e-160 569.7 552 70.1
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.2e-159 567.4 547 64.7
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.2e-159 567.4 535 70.5
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.7e-158 563.5 588 62.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.9e-157 560.1 546 65.0
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.9e-157 560.1 552 66.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 4.2e-157 558.9 489 73.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.1e-156 556.6 547 68.0
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 8.0e-156 554.7 518 71.2
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 5.2e-155 552.0 577 61.2
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.6e-154 549.7 551 67.7
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.3e-153 544.7 542 59.4
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 5.4e-152 542.0 553 64.0
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 9.2e-152 541.2 534 65.4
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 7.8e-151 538.1 550 63.6
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.7e-150 537.0 508 66.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.3e-150 536.6 552 63.0
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 2.9e-150 536.2 547 66.9
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 5.6e-149 531.9 519 68.2
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 9.5e-149 531.2 508 65.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.1e-148 530.0 555 57.1
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 6.1e-148 528.5 552 66.8
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 4.0e-147 525.8 569 63.1
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.2e-146 524.2 550 62.0
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.2e-145 520.0 552 56.2
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.6e-143 513.8 550 64.4
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-142 511.1 591 55.0
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.0e-142 509.6 365 78.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 9.5e-141 504.6 532 69.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.6e-140 503.8 553 64.2
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 3.6e-140 502.7 553 64.7
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 6.2e-140 501.9 555 64.3
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.1e-139 501.1 555 63.8
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.1e-139 501.1 555 63.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.5e-138 497.3 566 55.5
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 7.5e-138 495.0 544 65.4
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.2e-137 493.4 518 64.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 8.3e-137 491.5 549 63.6
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-136 490.7 566 57.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 3.2e-136 489.6 541 56.2
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.5e-135 486.1 554 61.6
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.1e-133 481.1 540 60.9
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.5e-133 480.7 569 54.7
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.6e-133 478.8 547 58.9
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.2e-132 477.6 842 42.0
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 2.8e-132 476.5 560 61.6
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.1e-131 474.6 546 62.8
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.4e-131 474.2 549 57.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-131 473.8 584 53.1
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 4.0e-131 472.6 549 62.5
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.7e-127 459.9 542 63.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.7e-127 459.9 543 55.1
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.7e-126 457.2 504 68.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 6.6e-126 455.3 553 59.7
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.1e-125 454.5 554 60.1
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 9.6e-125 451.4 555 57.7
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.8e-124 449.9 490 61.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.5e-122 444.1 468 64.3
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 6.0e-119 432.2 550 49.8
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.1e-116 423.7 534 53.4
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 8.1e-116 421.8 549 56.3
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 9.9e-114 414.8 553 55.0
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 6.4e-113 412.1 562 54.8
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 8.4e-113 411.8 474 64.1
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.3e-110 404.4 418 66.7
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 6.6e-110 402.1 546 55.7
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 6.6e-110 402.1 546 55.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.3e-109 398.7 588 48.5
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 6.2e-108 395.6 368 75.0
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 2.4e-107 393.7 559 51.7
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 7.1e-104 382.1 323 64.4
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.5e-98 364.4 551 44.5
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.4e-96 357.8 451 62.5
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.3e-94 350.5 558 44.3
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.7e-94 348.6 558 44.1
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.3e-92 344.7 324 79.0
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-92 344.7 558 44.4
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.7e-92 343.2 556 43.3
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.7e-92 343.2 558 44.3
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.2e-92 342.4 557 43.4
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 5.8e-90 335.9 556 43.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 7.1e-88 328.9 431 51.5
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.5e-85 321.2 526 52.7
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.5e-85 320.5 195 78.5
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.5e-80 303.9 378 52.4
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 5.9e-74 282.7 371 65.5
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 4.5e-66 256.5 314 54.5
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.2e-64 250.0 316 47.5
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 9.4e-64 248.8 373 60.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.2e-62 243.0 292 55.5
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.6e-55 221.5 250 57.6
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-52 211.1 512 35.7
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.6e-40 169.9 181 77.3
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-35 155.6 211 51.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.5e-34 150.6 162 69.1
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.0e-33 149.1 101 66.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-32 145.2 251 40.2
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 8.9e-30 136.0 207 50.2
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 8.3e-28 129.4 176 51.7
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.7e-25 121.7 101 75.2
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.1e-23 112.8 319 31.0
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.8e-22 111.7 54 94.4
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.3e-22 111.3 136 42.6
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.2e-21 109.0 206 42.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.4e-19 102.1 297 35.7
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.6e-18 98.6 51 86.3
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 6.0e-18 96.7 107 57.9
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 7.8e-18 96.3 55 83.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.3e-16 90.9 94 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.1e-15 88.2 257 35.0
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-15 87.4 73 67.1
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-15 87.4 73 67.1
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-14 85.5 124 50.8
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.8e-14 85.1 96 57.3
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.2e-14 83.6 210 38.1
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 8.9e-14 82.8 113 52.2
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 6.4e-12 76.6 102 47.1
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.1e-10 71.6 59 59.3
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 6.6e-09 66.6 54 64.8
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.5e-08 65.5 94 48.9
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.6e-07 60.8 64 50.0
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 5.2e-06 57.0 179 33.0


User provided reference genes

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