Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 6.6e-102 374.4 243 100.0
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 5.8e-74 281.6 209 74.2
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 2.5e-64 249.6 204 71.6
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 1.6e-63 246.9 210 68.6
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.6e-63 245.7 202 74.3
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 2.3e-62 243.0 208 76.0
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 5.1e-62 241.9 201 79.1
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.1e-61 240.7 202 67.3
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.0e-61 240.0 209 78.0
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.3e-61 239.2 209 78.0
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 1.7e-60 236.9 207 62.3
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 2.2e-60 236.5 207 72.0
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.2e-60 236.5 202 65.8
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.4e-59 233.8 203 76.8
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 2.4e-59 233.0 205 63.9
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 4.1e-59 232.3 207 67.6
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 9.1e-59 231.1 202 66.3
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.0e-58 229.9 209 63.2
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 2.6e-58 229.6 208 68.8
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 3.4e-58 229.2 207 59.9
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 6.5e-57 224.9 208 68.8
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.4e-56 223.8 203 64.0
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 2.5e-56 223.0 202 60.9
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 5.5e-56 221.9 215 65.6
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 5.5e-56 221.9 209 65.6
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 9.4e-56 221.1 208 64.9
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 1.6e-55 220.3 210 72.9
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 2.7e-55 219.5 210 69.5
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 2.3e-54 216.5 210 60.0
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 2.3e-54 216.5 208 66.3
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 3.0e-54 216.1 207 62.3
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.7e-54 214.9 207 65.7
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.5e-53 213.8 198 60.6
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.0e-53 213.4 205 61.0
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.6e-53 213.0 206 65.5
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 1.7e-52 210.3 223 56.5
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 2.8e-52 209.5 196 60.2
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.8e-52 209.5 210 64.8
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 1.1e-51 207.6 211 63.5
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 3.1e-51 206.1 206 64.6
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 4.1e-51 205.7 205 57.6
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 7.0e-51 204.9 202 67.8
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 7.0e-51 204.9 203 68.5
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 2.6e-50 203.0 210 60.0
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 7.7e-50 201.4 208 67.3
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.0e-49 201.1 202 65.3
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.0e-49 201.1 202 58.4
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 1.3e-49 200.7 203 68.5
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.3e-49 200.7 187 63.6
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.7e-49 200.3 129 79.8
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 1.5e-48 197.2 223 53.4
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 2.5e-48 196.4 116 84.5
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 7.2e-48 194.9 208 54.8
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 9.4e-48 194.5 203 56.2
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 9.4e-48 194.5 203 56.2
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 1.6e-47 193.7 115 84.3
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 1.6e-47 193.7 206 63.1
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 2.7e-47 193.0 211 67.3
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 4.7e-47 192.2 206 71.4
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 8.0e-47 191.4 233 53.2
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 1.8e-46 190.3 210 63.3
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 6.7e-46 188.3 209 55.0
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 1.1e-45 187.6 203 70.0
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.1e-45 187.6 211 69.2
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 2.0e-45 186.8 127 77.2
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 2.6e-45 186.4 224 51.8
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 7.4e-45 184.9 224 51.3
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 1.7e-44 183.7 122 74.6
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 2.8e-44 183.0 201 69.7
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 6.3e-44 181.8 207 58.9
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 8.2e-44 181.4 126 77.0
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 3.1e-43 179.5 221 58.8
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 3.1e-43 179.5 203 68.5
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 4.1e-43 179.1 202 62.4
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 9.1e-43 177.9 212 59.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 9.1e-43 177.9 257 49.0
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.2e-42 177.6 205 52.7
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-42 177.2 119 78.2
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-42 177.2 119 78.2
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 2.6e-42 176.4 122 75.4
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 4.5e-42 175.6 109 80.7
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 4.5e-42 175.6 120 76.7
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.0e-41 174.5 109 79.8
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.9e-41 172.9 118 73.7
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 3.8e-41 172.6 123 73.2
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.8e-41 172.6 189 62.4
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 3.8e-41 172.6 122 73.0
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 5.0e-41 172.2 117 76.1
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 5.0e-41 172.2 116 75.9
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 5.0e-41 172.2 116 75.9
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 8.5e-41 171.4 225 51.1
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 8.5e-41 171.4 206 64.6
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 8.5e-41 171.4 127 74.8
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 1.1e-40 171.0 208 51.4
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.5e-40 170.6 120 71.7
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.5e-40 170.6 184 56.5
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.9e-40 170.2 119 75.6
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 1.9e-40 170.2 223 49.3
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.5e-40 169.9 192 55.2
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 3.2e-40 169.5 122 72.1
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 4.2e-40 169.1 120 73.3
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 5.5e-40 168.7 208 52.9
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.2e-40 168.3 208 52.4
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-39 167.5 207 59.9
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.1e-39 166.8 208 51.9
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 2.7e-39 166.4 208 51.9
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.7e-39 165.6 121 74.4
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 6.1e-39 165.2 208 52.4
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 8.0e-39 164.9 252 51.2
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.0e-38 164.5 189 58.2
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.8e-38 163.7 240 54.2
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 3.0e-38 162.9 205 59.5
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 5.2e-38 162.2 206 57.8
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 5.2e-38 162.2 206 57.8
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 5.2e-38 162.2 207 51.2
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 1.5e-37 160.6 109 77.1
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 2.0e-37 160.2 116 74.1
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.0e-37 160.2 107 75.7
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.0e-37 160.2 107 75.7
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.6e-37 159.8 124 71.0
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.7e-37 158.7 110 72.7
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.3e-36 157.5 209 48.8
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 3.7e-36 156.0 205 62.9
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 1.1e-35 154.5 108 70.4
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.4e-35 154.1 225 45.8
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 4.1e-35 152.5 124 68.5
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 1.6e-34 150.6 122 67.2
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 7.7e-34 148.3 191 58.1
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.8e-33 146.0 134 66.4
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.8e-33 146.0 134 66.4
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 5.0e-33 145.6 202 56.9
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 6.5e-33 145.2 134 63.4
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 8.5e-33 144.8 116 68.1
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.2e-32 142.5 122 65.6
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 7.2e-32 141.7 203 47.8
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 7.2e-32 141.7 121 64.5
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.6e-31 140.6 126 63.5
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.6e-31 140.6 122 64.8
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 1.6e-31 140.6 122 63.9
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 6.1e-31 138.7 136 64.0
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 8.0e-31 138.3 121 65.3
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.0e-30 137.9 106 72.6
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.0e-30 137.9 106 72.6
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.0e-30 137.9 106 71.7
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 1.4e-30 137.5 136 63.2
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-29 134.4 117 67.5
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-29 134.4 117 67.5
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.0e-29 133.7 117 61.5
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.0e-29 133.7 124 63.7
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.4e-29 132.9 210 42.9
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 7.5e-29 131.7 120 62.5
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 9.8e-29 131.3 80 78.8
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 1.3e-28 131.0 89 74.2
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.3e-28 131.0 80 81.2
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 1.3e-28 131.0 89 75.3
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 1.3e-28 131.0 89 75.3
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 1.3e-28 131.0 189 54.0
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 2.4e-27 126.7 190 56.3
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 4.1e-27 125.9 215 45.6
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 4.1e-27 125.9 128 59.4
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.0e-26 123.6 189 64.6
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 6.6e-25 118.6 93 67.7
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 1.9e-24 117.1 146 51.4
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 2.5e-24 116.7 62 85.5
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.2e-23 114.4 121 56.2
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 1.6e-23 114.0 62 87.1
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.7e-23 112.5 56 94.6
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.8e-22 110.5 92 64.1
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 2.3e-22 110.2 81 71.6
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 2.3e-22 110.2 106 59.4
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 5.2e-22 109.0 103 65.0
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 6.8e-22 108.6 195 40.0
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 3.4e-21 106.3 195 39.5
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 6.3e-20 102.1 214 38.3
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 1.2e-13 81.3 41 82.9
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 7.5e-13 78.6 201 35.3
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 1.3e-12 77.8 66 63.6
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 2.5e-08 63.5 79 55.7
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 9.5e-08 61.6 126 42.9
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 9.5e-08 61.6 41 65.9
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 1.2e-07 61.2 126 42.9
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 1.2e-07 61.2 126 42.9
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 6.8e-06 55.5 41 63.4


User provided reference genes

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