Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 2.2e-266 921.8 486 100.0
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 8.4e-173 610.9 462 72.7
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.3e-168 597.0 487 69.0
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 2.8e-168 595.9 487 68.4
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.9e-165 585.9 487 68.4
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 8.4e-165 584.3 482 68.7
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 1.6e-163 580.1 488 66.2
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 3.5e-163 578.9 499 66.9
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 3.0e-162 575.9 456 70.2
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 3.9e-162 575.5 469 69.5
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 2.5e-161 572.8 452 71.5
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 4.3e-161 572.0 487 66.1
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 9.6e-161 570.9 486 67.5
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 2.1e-160 569.7 491 67.2
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.1e-160 569.7 451 71.0
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.1e-159 565.5 487 67.1
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 4.1e-159 565.5 453 69.1
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 4.1e-159 565.5 486 66.7
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 6.9e-159 564.7 449 69.5
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.5e-158 563.5 454 69.6
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 2.6e-158 562.8 452 69.9
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 7.6e-158 561.2 457 72.0
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 1.4e-156 557.0 454 69.2
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 1.4e-156 557.0 465 66.5
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 3.2e-156 555.8 465 69.0
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 4.2e-156 555.4 480 67.1
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 1.0e-154 550.8 453 67.3
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.9e-154 548.9 474 64.1
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 5.1e-154 548.5 475 64.0
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.1e-153 547.4 483 66.5
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 1.1e-153 547.4 472 65.0
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 1.1e-153 547.4 450 68.4
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 3.3e-153 545.8 462 68.4
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.3e-153 545.4 450 68.9
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 7.4e-153 544.7 453 66.9
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 8.2e-152 541.2 458 65.5
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 3.4e-150 535.8 456 64.0
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 1.3e-149 533.9 451 64.1
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 2.2e-149 533.1 453 66.2
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 5.0e-149 531.9 513 60.8
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 2.5e-148 529.6 451 68.7
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 9.4e-148 527.7 453 66.9
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 9.4e-148 527.7 477 62.7
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.0e-146 522.7 461 62.7
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 6.7e-146 521.5 465 65.6
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 8.8e-146 521.2 453 65.6
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 3.3e-145 519.2 457 65.6
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.7e-144 515.8 444 66.9
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 6.3e-144 515.0 449 63.7
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.1e-143 514.2 456 64.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.4e-143 513.8 431 69.1
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 9.1e-143 511.1 449 66.1
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 1.7e-141 506.9 465 61.7
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 2.9e-141 506.1 455 64.2
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 6.5e-141 505.0 448 61.4
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.1e-140 504.2 448 66.5
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.1e-140 504.2 449 65.0
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 2.5e-140 503.1 467 59.5
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 3.2e-140 502.7 486 61.1
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 5.5e-140 501.9 451 63.2
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 1.2e-139 500.7 460 63.9
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 2.7e-139 499.6 460 60.0
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 3.6e-139 499.2 459 59.9
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 7.9e-139 498.0 474 60.3
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 1.1e-137 494.2 449 63.5
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 7.4e-137 491.5 497 57.7
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.3e-133 480.7 450 59.6
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 1.5e-132 477.2 454 60.4
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 3.2e-132 476.1 469 56.7
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 7.2e-132 474.9 461 61.2
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 6.1e-131 471.9 457 57.5
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 8.0e-131 471.5 453 58.3
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.8e-130 470.3 455 57.8
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 2.3e-130 469.9 458 60.3
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 5.2e-130 468.8 457 57.8
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 3.3e-129 466.1 453 57.6
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 5.7e-129 465.3 439 63.8
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 3.7e-128 462.6 451 56.5
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 1.0e-125 454.5 350 72.3
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.7e-125 453.8 429 63.6
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 6.5e-125 451.8 454 59.9
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 9.4e-124 448.0 650 47.2
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 1.2e-123 447.6 450 55.3
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 1.4e-122 444.1 449 54.1
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.4e-122 444.1 387 67.7
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 4.0e-122 442.6 461 55.1
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 1.2e-121 441.0 479 53.0
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 2.6e-121 439.9 327 70.3
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.3e-117 427.6 459 54.0
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 1.1e-111 407.9 365 65.5
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 7.3e-108 395.2 337 63.5
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 4.0e-106 389.4 404 59.9
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 8.9e-106 388.3 392 61.5
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.6e-105 386.7 414 53.9
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.7e-104 382.9 357 64.1
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 9.2e-103 378.3 305 71.8
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.8e-90 337.4 401 51.6
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.2e-89 334.7 408 49.3
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 4.4e-89 332.8 268 72.4
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.0e-85 321.6 359 51.3
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 3.9e-85 319.7 264 70.8
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 8.1e-75 285.4 284 56.7
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.7e-62 243.8 448 38.6
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.8e-61 241.1 375 45.3
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 2.1e-59 234.2 290 48.3
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 4.3e-52 209.9 356 44.1
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 1.6e-51 208.0 190 56.8
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 1.6e-51 208.0 363 39.9
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.9e-44 184.5 258 48.8
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 5.0e-40 169.9 102 79.4
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 3.2e-39 167.2 182 61.0
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 7.2e-39 166.0 98 79.6
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.7e-38 164.1 145 60.7
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.9e-37 160.2 93 81.7
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.7e-35 154.8 171 60.2
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 6.3e-35 152.9 187 61.5
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.0e-29 135.6 117 62.4
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 1.5e-25 121.7 139 56.8
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.2e-23 114.0 100 58.0
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.7e-22 110.2 356 29.5
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.4e-18 98.6 114 48.2
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 2.6e-17 94.4 125 51.2
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 4.5e-17 93.6 52 84.6
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.2e-15 87.4 151 39.1
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 7.2e-15 86.3 45 82.2
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 6.7e-13 79.7 49 73.5
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 6.7e-13 79.7 49 73.5
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.2e-12 79.0 81 46.9
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 9.7e-12 75.9 52 69.2
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 8.2e-11 72.8 50 62.0
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 7.0e-10 69.7 56 58.9
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 4.5e-09 67.0 41 78.0
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 5.9e-09 66.6 65 55.4
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 7.7e-09 66.2 64 53.1
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 1.7e-08 65.1 102 44.1
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 6.5e-08 63.2 33 87.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 5.5e-07 60.1 83 44.6
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 7.2e-07 59.7 62 54.8
SHI14720 Sapria himalayana HOM05D005431 ORTHO05D006762 2.1e-06 58.2 56 48.2


User provided reference genes

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