Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 1.5e-246 855.9 482 100.0
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 1.1e-217 760.0 482 84.4
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.6e-216 756.1 482 84.4
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.5e-214 749.6 482 84.9
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 6.5e-210 734.2 477 84.3
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.3e-205 719.9 486 82.5
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 8.0e-184 647.5 482 74.9
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 2.9e-173 612.5 489 68.3
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 4.6e-171 605.1 476 71.0
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 8.6e-170 600.9 488 68.6
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 2.5e-169 599.4 490 66.7
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 9.5e-169 597.4 455 71.0
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 6.2e-168 594.7 489 67.3
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 1.9e-164 583.2 468 73.1
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.2e-164 582.4 481 68.4
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 4.2e-164 582.0 488 67.2
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 5.4e-164 581.6 478 66.9
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 7.8e-163 577.8 469 73.6
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 7.8e-163 577.8 491 67.2
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 3.9e-162 575.5 488 66.4
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 2.5e-161 572.8 471 67.9
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 4.3e-161 572.0 466 68.5
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 2.8e-160 569.3 484 67.1
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 3.1e-159 565.8 478 69.2
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 6.9e-159 564.7 454 69.6
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 2.0e-158 563.1 486 64.6
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 2.0e-158 563.1 483 66.9
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 5.8e-158 561.6 491 66.2
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 9.9e-158 560.8 467 66.2
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 3.2e-156 555.8 472 66.5
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 5.4e-156 555.1 488 66.8
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.2e-155 553.9 520 62.5
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.5e-155 552.4 449 71.0
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 6.0e-155 551.6 464 67.7
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.1e-153 547.4 448 66.3
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 2.5e-153 546.2 484 65.3
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 7.3e-153 544.7 482 60.6
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 2.8e-152 542.7 448 66.5
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 8.1e-152 541.2 448 67.0
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.0e-151 538.9 467 62.7
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.0e-151 538.9 467 63.6
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 1.5e-150 537.0 487 63.7
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.4e-148 530.4 454 66.1
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 1.4e-148 530.4 447 68.0
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 5.4e-148 528.5 456 64.3
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 7.1e-148 528.1 473 68.5
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 2.1e-147 526.6 475 66.1
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.5e-147 525.8 458 63.8
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 6.7e-146 521.5 453 65.1
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 1.9e-145 520.0 445 66.1
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 4.3e-145 518.8 477 63.9
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 2.8e-144 516.2 481 65.9
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 5.3e-143 511.9 445 66.3
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 5.3e-143 511.9 466 64.2
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.5e-142 510.4 442 67.9
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 3.4e-142 509.2 466 61.6
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 9.9e-142 507.7 483 58.8
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 1.4e-140 503.8 449 62.1
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.4e-140 503.8 487 57.5
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 1.9e-140 503.4 455 65.9
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 4.2e-140 502.3 456 61.8
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 7.1e-140 501.5 521 57.8
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 7.1e-140 501.5 449 63.5
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 3.5e-139 499.2 451 63.2
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 7.9e-139 498.0 485 56.5
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.3e-138 497.3 450 64.4
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 2.3e-138 496.5 486 56.6
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 3.9e-138 495.7 482 56.4
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.9e-138 495.7 455 61.3
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 1.1e-137 494.2 489 56.2
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 4.3e-137 492.3 484 56.6
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 4.8e-136 488.8 485 56.3
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 2.4e-135 486.5 446 65.2
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 3.1e-135 486.1 457 60.6
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 6.9e-135 485.0 449 59.5
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 2.9e-133 479.6 450 63.1
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 6.5e-133 478.4 458 57.9
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 7.1e-132 474.9 481 57.0
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 1.2e-131 474.2 649 49.2
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 4.6e-131 472.2 428 63.6
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 1.3e-130 470.7 497 53.9
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 4.8e-128 462.2 428 66.6
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 2.0e-126 456.8 423 65.7
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 4.5e-126 455.7 462 59.1
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 7.7e-126 454.9 513 51.5
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 2.5e-124 449.9 454 59.0
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 3.7e-120 436.0 387 67.4
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 1.2e-118 431.0 351 68.9
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 3.9e-114 416.0 410 57.8
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.4e-111 407.5 453 53.2
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 1.8e-111 407.1 325 72.0
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 5.0e-109 399.1 350 64.3
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 8.8e-106 388.3 327 63.9
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 7.0e-103 378.6 400 59.0
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 7.7e-102 375.2 359 62.1
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 4.4e-97 359.4 334 65.3
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 7.5e-89 332.0 408 48.0
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.1e-84 318.2 397 49.1
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.2e-80 303.9 225 70.7
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.2e-79 300.1 322 55.6
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.3e-77 293.9 277 64.3
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 7.3e-76 288.9 279 59.1
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.0e-74 283.1 437 43.0
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 6.8e-58 229.2 388 45.1
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 2.6e-57 227.3 217 56.2
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 3.7e-56 223.4 345 45.8
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 9.2e-55 218.8 593 35.2
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 2.7e-54 217.2 279 45.9
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.8e-50 204.5 174 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 4.0e-42 176.8 250 48.8
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 5.3e-42 176.4 98 85.7
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 7.6e-41 172.6 102 82.4
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.1e-39 168.7 126 70.6
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 9.3e-39 165.6 97 79.4
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 6.7e-29 132.9 183 53.6
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 2.1e-27 127.9 109 67.9
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.1e-26 124.0 183 54.1
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 5.3e-26 123.2 355 31.3
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.6e-25 120.9 100 61.0
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 4.3e-20 103.6 121 51.2
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 5.7e-20 103.2 110 50.0
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 3.4e-17 94.0 53 81.1
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 2.2e-16 91.3 113 54.9
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 1.1e-15 89.0 45 86.7
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.4e-15 88.6 95 46.3
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 6.1e-14 83.2 49 79.6
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 6.1e-14 83.2 49 79.6
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 9.7e-12 75.9 83 45.8
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 1.3e-11 75.5 52 69.2
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 2.4e-10 71.2 55 65.5
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 5.3e-10 70.1 50 62.0
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 1.2e-09 68.9 48 66.7
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 1.5e-09 68.6 56 58.9
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 3.4e-09 67.4 48 68.8
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.9e-08 64.3 41 80.5
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 5.0e-08 63.5 33 87.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.4e-07 62.0 83 44.6


User provided reference genes

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