Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1603.2 800 100.0
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1262.3 808 79.7
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1234.9 805 78.5
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1232.6 805 78.4
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 0.0e+00 1214.9 812 76.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1210.7 798 74.8
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 0.0e+00 1179.1 808 72.9
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1170.6 805 73.4
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1164.8 801 74.2
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 0.0e+00 1153.7 799 72.0
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1144.8 799 72.6
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1142.5 791 72.7
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1134.8 792 72.6
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1127.9 800 71.4
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 0.0e+00 1120.9 718 77.4
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 0.0e+00 1119.8 813 69.7
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 0.0e+00 1118.6 787 72.8
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1118.2 803 70.6
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 0.0e+00 1114.8 757 73.8
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 0.0e+00 1110.1 734 73.7
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1108.2 789 72.5
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 0.0e+00 1100.9 742 72.8
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 0.0e+00 1090.1 774 70.2
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 0.0e+00 1088.9 789 69.1
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 0.0e+00 1082.4 795 66.8
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 0.0e+00 1075.8 802 68.3
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 0.0e+00 1075.1 780 68.3
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.1e-311 1073.2 802 68.5
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.1e-310 1069.7 803 68.2
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.1e-310 1069.7 806 68.0
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.4e-310 1069.3 806 67.0
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 3.2e-310 1068.1 659 76.5
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 7.1e-310 1067.0 760 71.1
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 4.6e-309 1064.3 782 67.9
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.3e-308 1062.0 763 68.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 6.6e-308 1060.4 798 66.9
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 8.6e-308 1060.1 763 68.4
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.6e-306 1055.8 797 66.6
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 2.4e-305 1052.0 741 69.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.4e-305 1052.0 732 69.3
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.6e-304 1048.5 736 69.2
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 9.2e-302 1040.0 800 65.5
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.5e-299 1032.7 804 65.7
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 3.3e-299 1031.6 776 68.3
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 3.3e-299 1031.6 786 65.5
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.7e-298 1027.7 829 64.2
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 3.1e-297 1025.0 777 66.4
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 6.9e-297 1023.8 786 65.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 3.8e-295 1018.1 704 71.2
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 1.3e-292 1009.6 789 65.1
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.3e-292 1008.8 806 65.4
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.5e-291 1006.1 808 64.0
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.5e-291 1006.1 705 69.4
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.1e-289 1000.0 803 64.3
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 2.4e-289 998.8 770 63.8
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 3.1e-289 998.4 800 62.8
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 9.0e-289 996.9 812 63.7
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 4.6e-285 984.6 789 62.1
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 7.9e-285 983.8 711 67.5
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.5e-283 979.5 791 61.7
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 9.0e-281 970.3 795 61.6
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 9.0e-281 970.3 662 68.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 9.9e-280 966.8 756 64.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.7e-279 966.1 749 63.6
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.4e-278 962.2 698 66.0
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 3.0e-276 955.3 741 63.4
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 3.9e-276 954.9 655 71.0
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.5e-275 952.2 777 60.9
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.6e-274 949.5 759 62.2
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.4e-273 946.4 797 59.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 5.3e-273 944.5 760 62.9
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.0e-272 942.6 801 59.9
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.0e-271 940.3 762 60.4
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 1.0e-271 940.3 662 69.9
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 3.8e-271 938.3 794 59.7
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.4e-270 936.4 810 59.0
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.7e-269 932.2 745 60.8
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 2.7e-269 932.2 762 59.7
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 2.7e-269 932.2 762 59.7
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 2.7e-269 932.2 762 59.7
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.8e-268 929.5 762 59.7
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 4.5e-264 914.8 786 59.2
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.1e-262 910.2 698 63.2
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.3e-259 898.3 622 71.2
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.9e-257 891.0 546 79.3
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.2e-256 890.2 761 58.0
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.0e-256 889.4 789 57.7
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 7.9e-253 877.5 733 60.0
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 7.0e-249 864.4 794 56.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 4.5e-248 861.7 766 56.7
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 4.2e-246 855.1 752 55.3
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.6e-245 853.2 565 74.3
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.0e-239 833.9 743 56.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.7e-237 825.9 672 60.4
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 5.3e-233 811.6 798 52.4
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 2.5e-230 802.7 611 63.7
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 5.2e-228 795.0 808 55.0
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.4e-193 680.6 565 63.0
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 2.1e-192 676.8 659 52.7
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.0e-191 674.5 678 49.1
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 7.8e-176 621.7 466 66.3
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 6.6e-175 618.6 773 45.9
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 9.6e-158 561.6 430 65.3
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.0e-146 525.0 755 44.0
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.7e-138 497.7 539 50.6
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.7e-117 427.9 304 72.0
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.8e-117 427.2 360 63.9
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-113 415.2 492 48.6
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.0e-95 353.6 660 33.0
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 4.3e-89 333.6 311 57.6
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 3.1e-87 327.4 385 52.2
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.6e-78 297.7 645 29.6
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 2.6e-70 271.2 797 26.6
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 7.8e-67 259.6 672 26.3
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.9e-65 255.0 209 63.2
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 9.0e-63 246.1 702 26.9
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 1.5e-46 192.2 150 63.3
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 2.6e-46 191.4 666 24.2
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.3e-45 189.1 183 56.8
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 3.5e-35 154.5 198 43.9
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 6.3e-24 117.1 182 42.9
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 3.1e-15 88.2 181 36.5
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 1.3e-13 82.8 731 18.5
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 6.5e-13 80.5 59 61.0
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.6e-11 75.9 610 17.9
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 3.6e-11 74.7 54 72.2
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 1.8e-10 72.4 357 23.5
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 2.3e-10 72.0 51 64.7
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.5e-09 69.3 53 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-09 68.6 361 23.0
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 3.7e-08 64.7 309 23.6
AagrBONN_evm.TU.Sc2ySwM_117.4077 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.2e-08 63.5 365 21.9
Eucgr.L00294 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.4e-07 62.8 225 26.2
Prupe.7G236400 Prunus persica HOM05D000001 ORTHO05D000003 1.4e-07 62.8 205 25.9
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 2.4e-07 62.0 179 22.3
Eucgr.C01131 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.1e-07 61.2 225 26.2
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 5.3e-07 60.8 256 21.9
AagrBONN_evm.TU.Sc2ySwM_362.2733 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-07 60.5 401 21.2
FAN17G1880 Fragaria x ananassa HOM05D006414 ORTHO05D007780 9.1e-07 60.1 103 31.1
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 9.1e-07 60.1 156 27.6
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 1.2e-06 59.7 232 24.6
Migut.B00737 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.2e-06 59.7 179 28.5
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 2.0e-06 58.9 147 25.9
MBI07_g07827_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D026255 2.0e-06 58.9 216 24.5
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 2.7e-06 58.5 147 25.9
AagrBONN_evm.TU.Sc2ySwM_228.880 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-06 58.2 318 22.3
Carub.0003s0587 Capsella rubella HOM05D001779 ORTHO05D001753 4.5e-06 57.8 149 26.2
DCAR_026955 Daucus carota HOM05D001779 ORTHO05D001753 4.5e-06 57.8 149 26.8
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-06 57.8 231 22.1
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 4.5e-06 57.8 231 22.1
PGR083G2288 Punica granatum HOM05D000001 ORTHO05D000003 4.5e-06 57.8 251 23.1
Cfa008640 Carpinus fangiana HOM05D000001 ORTHO05D009689 5.9e-06 57.4 126 31.7
Eucgr.J00110 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.7e-06 57.0 472 21.6
Nn7g38297 Nelumbo nucifera HOM05D000001 ORTHO05D000003 7.7e-06 57.0 174 28.7
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 7.7e-06 57.0 156 26.3
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 7.7e-06 57.0 156 26.3
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 7.7e-06 57.0 156 26.3
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 7.7e-06 57.0 156 26.3
THA.LOC104826684 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 7.7e-06 57.0 213 24.9


User provided reference genes

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