Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.0e-208 728.8 356 100.0
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.3e-191 672.9 361 92.0
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.8e-189 665.2 359 90.0
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.8e-189 665.2 360 90.3
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 8.0e-189 663.7 363 90.1
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 3.0e-188 661.8 360 89.7
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 4.0e-188 661.4 354 91.0
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.2e-187 659.8 356 91.0
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.2e-187 659.8 374 88.2
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 3.4e-187 658.3 355 90.4
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 9.8e-187 656.8 358 88.0
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 2.2e-186 655.6 360 89.2
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 2.2e-186 655.6 353 90.1
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.8e-186 655.2 361 89.5
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 8.3e-186 653.7 358 89.1
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 4.1e-185 651.4 358 88.3
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 9.2e-185 650.2 356 88.5
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.0e-184 649.0 354 88.4
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 4.5e-184 647.9 359 88.0
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 4.5e-184 647.9 360 87.2
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.3e-183 645.6 354 88.4
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 2.9e-183 645.2 359 87.2
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 3.9e-183 644.8 407 80.8
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.6e-183 644.0 354 88.1
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 6.6e-183 644.0 354 88.1
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 8.6e-183 643.7 354 88.7
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 1.5e-182 642.9 350 87.1
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 9.5e-182 640.2 360 87.5
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 9.5e-182 640.2 414 78.3
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 2.1e-181 639.0 360 86.1
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 4.7e-181 637.9 358 85.5
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.8e-180 636.0 357 86.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.2e-180 634.4 362 86.5
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 5.2e-180 634.4 362 87.0
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 6.8e-180 634.0 355 86.2
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.0e-179 632.5 360 85.3
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.6e-179 632.1 356 86.2
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 2.6e-179 632.1 358 84.9
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 9.8e-179 630.2 357 85.4
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.9e-178 628.6 357 84.6
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.7e-178 628.2 355 85.9
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 3.7e-178 628.2 345 87.2
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.4e-177 626.3 360 86.4
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 7.0e-177 624.0 340 88.8
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.2e-176 623.2 359 85.5
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.7e-176 622.1 359 85.0
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 4.6e-176 621.3 363 85.7
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.0e-175 620.2 336 91.4
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 3.0e-175 618.6 355 84.2
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 1.1e-174 616.7 335 90.1
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 4.3e-174 614.8 365 83.6
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.6e-173 612.8 344 85.2
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 2.1e-173 612.5 372 80.4
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.1e-173 612.5 389 78.9
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 3.6e-173 611.7 324 90.1
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.1e-172 610.1 343 84.8
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.1e-172 610.1 343 84.8
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.4e-172 609.8 338 86.4
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 3.1e-172 608.6 382 78.3
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 3.4e-171 605.1 344 84.6
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 5.8e-171 604.4 365 80.8
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 9.8e-171 603.6 360 83.1
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 8.3e-170 600.5 349 84.5
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.4e-169 599.7 379 78.6
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.9e-169 599.4 376 81.4
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 2.4e-169 599.0 394 76.1
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 2.7e-168 595.5 359 80.2
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 3.0e-167 592.0 413 74.3
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.9e-166 589.3 375 80.3
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.5e-166 589.0 350 82.0
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 2.8e-165 585.5 360 80.0
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 3.6e-165 585.1 360 79.7
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.8e-164 582.8 370 80.0
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 3.1e-164 582.0 355 81.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 2.9e-162 575.5 350 80.9
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 6.0e-160 567.8 445 67.4
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.7e-159 566.2 359 78.8
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 3.9e-159 565.1 313 86.3
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 8.6e-159 563.9 327 83.8
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 2.8e-157 558.9 316 86.4
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.2e-155 553.5 335 84.2
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.2e-155 553.5 340 75.9
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.3e-154 550.1 371 74.4
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 1.7e-154 549.7 333 76.6
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 8.4e-154 547.4 335 76.7
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.3e-150 535.0 358 75.1
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.4e-148 530.0 352 77.0
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 1.5e-147 526.6 353 76.8
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.3e-146 523.5 384 69.5
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 2.2e-146 522.7 373 72.7
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.3e-143 513.5 356 72.2
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 3.6e-141 505.4 363 71.9
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 4.0e-140 501.9 357 71.4
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 4.0e-140 501.9 304 74.7
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 2.9e-138 495.7 364 70.9
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 4.2e-137 491.9 305 74.8
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 4.9e-130 468.4 290 79.0
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 7.1e-129 464.5 259 84.6
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.2e-128 463.8 360 67.8
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 2.9e-122 442.6 327 63.3
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.4e-121 440.3 314 70.1
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.7e-120 436.0 238 87.8
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 5.1e-119 431.8 233 88.8
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 2.5e-118 429.5 332 63.3
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 9.7e-118 427.6 352 66.5
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 8.2e-117 424.5 217 93.1
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 8.2e-117 424.5 231 88.7
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 8.2e-117 424.5 231 88.7
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.0e-115 419.9 321 68.2
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.8e-114 415.6 239 84.5
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.6e-112 410.2 233 85.8
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.7e-112 409.5 360 63.9
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.1e-110 404.1 213 89.7
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.1e-108 397.5 230 85.2
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 3.8e-106 389.0 234 83.8
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 7.0e-100 368.2 435 46.7
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 4.8e-85 318.9 227 70.5
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 4.0e-71 272.7 202 69.8
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 5.6e-65 252.3 211 64.9
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 6.8e-63 245.4 358 44.4
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 6.0e-59 232.3 267 50.9
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.3e-55 220.3 129 82.2
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 5.4e-52 209.1 113 85.0
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 3.5e-51 206.5 114 86.8
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 9.9e-46 188.3 122 77.0
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 1.1e-39 168.3 101 81.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 1.8e-39 167.5 94 84.0
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 1.1e-36 158.3 83 89.2
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.6e-33 146.0 120 64.2
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.4e-28 130.6 77 85.7
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.6e-27 126.3 95 67.4
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.1e-23 113.6 77 71.4
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 1.4e-20 104.8 69 72.5
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 2.7e-19 100.5 74 68.9
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.5e-17 94.0 57 73.7
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.8e-16 89.7 60 71.7
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 4.9e-13 79.7 77 55.8
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 3.2e-12 77.0 54 72.2
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 1.0e-10 72.0 76 52.6
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 1.9e-09 67.8 31 93.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 5.7e-09 66.2 34 76.5
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 7.4e-09 65.9 44 70.5
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 1.1e-07 62.0 38 76.3
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 1.1e-07 62.0 38 76.3
PRCOL_00007051 Prasinoderma coloniale HOM05D002604 ORTHO05D003070 4.1e-07 60.1 188 26.1


User provided reference genes

Program Settings