Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30296 Davidia involucrata HOM05D005620 ORTHO05D002193 1.1e-235 819.7 434 100.0
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 4.4e-141 505.4 371 70.4
TAR636G3531 Trochodendron aralioides HOM05D005620 ORTHO05D002193 2.3e-129 466.5 426 58.5
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 5.6e-128 461.8 358 67.0
Nn7g36440 Nelumbo nucifera HOM05D005620 ORTHO05D002193 7.4e-128 461.5 437 57.0
CiPaw.09G042300 Carya illinoinensis HOM05D005620 ORTHO05D002193 1.1e-120 437.6 427 58.3
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 6.2e-119 431.8 412 56.3
Cfa016753 Carpinus fangiana HOM05D005620 ORTHO05D002193 2.5e-115 419.9 403 57.3
Thecc.05G145200 Theobroma cacao HOM05D005620 ORTHO05D002193 9.3e-115 417.9 416 52.9
Thecc.K0006600 Theobroma cacao HOM05D005620 ORTHO05D002193 9.3e-115 417.9 416 52.9
vmacro21954 Vaccinium macrocarpon HOM05D005620 ORTHO05D002193 2.7e-114 416.4 404 58.9
Duzib128G2038 Durio zibethinus HOM05D005620 ORTHO05D002193 5.1e-113 412.1 410 54.4
Atru.chr1.1154_Atru.chr1.1155 Acer truncatum HOM05D005620 ORTHO05D002193 1.3e-111 407.5 412 54.1
MD12G1086000 Malus domestica HOM05D005620 ORTHO05D002193 3.1e-110 402.9 409 55.5
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 4.1e-110 402.5 407 53.3
Prupe.7G050000 Prunus persica HOM05D005620 ORTHO05D002193 3.4e-109 399.4 378 56.3
TWI53G0092 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 5.9e-109 398.7 407 52.6
Lj5g0010383 Lotus japonicus HOM05D005620 ORTHO05D002193 6.1e-106 388.7 427 50.6
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 7.9e-106 388.3 405 52.6
Glyma.02G191100 Glycine max HOM05D005620 ORTHO05D002193 1.0e-105 387.9 390 55.9
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 3.0e-105 386.3 407 52.3
FvH4_6g24881 Fragaria vesca HOM05D005620 ORTHO05D002193 5.1e-105 385.6 355 59.7
Psat6g118160 Pisum sativum HOM05D005620 ORTHO05D002193 5.1e-105 385.6 398 53.0
arahy.Tifrunner.gnm1.ann1.K8ZQW4 Arachis hypogaea HOM05D005620 ORTHO05D002193 6.7e-105 385.2 411 52.8
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 6.7e-105 385.2 403 52.6
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 2.5e-104 383.3 391 55.8
Gorai.003G086400 Gossypium raimondii HOM05D005620 ORTHO05D002193 9.7e-104 381.3 418 49.8
Hma1.2p1_0056F.1_g031590 Hydrangea macrophylla HOM05D005620 ORTHO05D002193 1.3e-103 380.9 328 62.8
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 6.3e-103 378.6 403 52.1
RcHm_v2.0_Chr3g0484531 Rosa chinensis HOM05D005620 ORTHO05D002193 8.2e-103 378.3 343 60.3
Gohir.D03G074900 Gossypium hirsutum HOM05D005620 ORTHO05D002193 1.8e-102 377.1 418 49.0
Potri.016G042000 Populus trichocarpa HOM05D005620 ORTHO05D002193 2.4e-102 376.7 404 52.7
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 2.0e-101 373.6 421 51.1
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 4.5e-101 372.5 373 54.2
Ca_25788_v3 Cicer arietinum L. HOM05D005620 ORTHO05D002193 3.8e-100 369.4 435 49.2
COL.COLO4_21299 Corchorus olitorius HOM05D005620 ORTHO05D002193 5.0e-100 369.0 369 53.4
Gohir.A02G123602 Gossypium hirsutum HOM05D005620 ORTHO05D002193 6.5e-100 368.6 404 50.0
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 6.5e-100 368.6 406 52.7
Migut.K00117 Erythranthe guttata HOM05D005620 ORTHO05D002193 1.9e-99 367.1 350 56.0
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 1.6e-98 364.0 403 52.1
arahy.Tifrunner.gnm1.ann1.VNMU4U Arachis hypogaea HOM05D005620 ORTHO05D002193 2.7e-98 363.2 418 50.5
FAN05G4287 Fragaria x ananassa HOM05D005620 ORTHO05D002193 4.7e-98 362.5 411 52.6
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 6.1e-98 362.1 421 49.9
PSO339G1912 Papaver somniferum HOM05D005620 ORTHO05D002193 1.0e-97 361.3 408 50.5
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 3.9e-97 359.4 403 51.6
Aqoxy1G00331 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 5.1e-97 359.0 406 49.5
Cc06_g18370 Coffea canephora HOM05D005620 ORTHO05D002193 5.1e-97 359.0 403 50.6
SGA_v2.0_scaffold94G28513 Striga asiatica HOM05D005620 ORTHO05D002193 1.1e-96 357.8 388 52.6
CAN.G1237.2 Capsicum annuum HOM05D005620 ORTHO05D002193 4.8e-95 352.4 444 46.2
Aqoxy5G03576 Aquilegia oxysepala HOM05D005620 ORTHO05D002193 3.1e-94 349.7 357 52.4
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 9.1e-94 348.2 373 54.4
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 3.5e-93 346.3 369 53.7
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 4.5e-93 345.9 350 54.0
Oeu023137.3 Olea europaea HOM05D005620 ORTHO05D002193 4.5e-93 345.9 326 58.9
Eucgr.K01579 Eucalyptus grandis HOM05D005620 ORTHO05D002193 1.5e-91 340.9 393 50.4
Cpa.g.sc120.9 Carica papaya HOM05D005620 ORTHO05D002193 2.1e-90 337.0 263 65.0
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 3.9e-89 332.8 369 50.7
HPP92_016888 Vanilla planifolia HOM05D005620 ORTHO05D002193 5.2e-89 332.4 425 45.4
Peaxi162Scf00130g01016 Petunia axillaris HOM05D005620 ORTHO05D002193 9.7e-88 328.2 381 48.8
CsaV3_3G040940 Cucumis sativus L. HOM05D005620 ORTHO05D002193 1.3e-87 327.8 359 51.3
Lj2A390T38 Lonicera japonica HOM05D005620 ORTHO05D002193 3.7e-87 326.2 207 76.3
Nitab4.5_0000826g0250 Nicotiana tabacum HOM05D005620 ORTHO05D002193 8.2e-87 325.1 331 51.7
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 1.4e-86 324.3 339 51.3
MSTRG.10802 Avicennia marina HOM05D005620 ORTHO05D002193 1.4e-86 324.3 284 58.1
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 1.8e-86 323.9 373 48.8
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 2.4e-86 323.6 390 47.4
Sp4g23730 Schrenkiella parvula HOM05D005620 ORTHO05D002193 2.4e-86 323.6 341 51.9
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 3.1e-86 323.2 409 47.2
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 1.2e-85 321.2 392 48.5
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 7.7e-85 318.5 422 45.5
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 1.7e-84 317.4 434 45.2
Nitab4.5_0001618g0310 Nicotiana tabacum HOM05D005620 ORTHO05D002193 2.2e-84 317.0 401 47.6
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 2.9e-84 316.6 333 52.0
Haze_19751 Corylus avellana HOM05D005620 ORTHO05D002193 1.9e-83 313.9 430 44.7
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 5.5e-83 312.4 423 43.7
Ciclev10005485m.g Citrus clementina HOM05D005620 ORTHO05D002193 4.0e-81 306.2 176 81.2
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 2.0e-80 303.9 441 44.0
ATR0733G075 Amborella trichopoda HOM05D005620 ORTHO05D002193 9.8e-80 301.6 357 49.0
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 3.7e-79 299.7 456 41.2
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 8.3e-79 298.5 381 43.3
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 1.8e-78 297.4 244 63.5
Aa31LG1G23480 Aethionema arabicum HOM05D005620 ORTHO05D002193 5.4e-78 295.8 428 45.6
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 5.4e-78 295.8 433 43.0
A03p23280 Brassica napus HOM05D005620 ORTHO05D002193 2.2e-76 290.4 428 43.0
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 5.0e-76 289.3 383 45.4
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 8.5e-76 288.5 352 47.4
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 6.1e-74 282.3 333 47.4
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 1.8e-73 280.8 318 48.4
BraA03t11547Z Brassica rapa HOM05D005620 ORTHO05D002193 5.2e-73 279.3 427 42.2
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 8.8e-73 278.5 206 66.5
AUR62024530 Chenopodium quinoa HOM05D005620 ORTHO05D002193 2.6e-72 276.9 399 42.4
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 2.8e-71 273.5 432 41.9
Hund19124 Selenicereus undatus HOM05D005620 ORTHO05D002193 4.5e-69 266.2 357 43.7
DCAR_019347 Daucus carota HOM05D005620 ORTHO05D002193 7.7e-69 265.4 181 68.0
DCAR_019171 Daucus carota HOM05D005620 ORTHO05D002193 1.2e-64 251.5 296 50.3
Pp3c14_3710 Physcomitrium patens HOM05D005620 ORTHO05D002193 1.2e-61 241.5 356 41.9
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 6.6e-60 235.7 173 64.2
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 1.5e-59 234.6 193 59.1
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 1.2e-58 231.5 225 52.0
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 8.0e-58 228.8 169 60.4
MBI19_g08310_MAGBIO Magnolia biondii HOM05D005620 ORTHO05D002193 1.0e-57 228.4 226 55.8
QL07p005073 Quercus lobata HOM05D005620 ORTHO05D002193 2.6e-56 223.8 295 46.8
AUR62026123 Chenopodium quinoa HOM05D005620 ORTHO05D002193 5.8e-56 222.6 315 43.5
PGSC0003DMG403012723 Solanum tuberosum HOM05D005620 ORTHO05D002193 9.8e-56 221.9 293 45.7
Glyma.10G105800 Glycine max HOM05D005620 ORTHO05D002193 4.6e-53 213.0 312 44.2
SHI24582 Sapria himalayana HOM05D005620 ORTHO05D002193 1.3e-47 194.9 172 59.3
AL4G39920 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 4.9e-47 193.0 157 63.7
SEGI_06428 Sequoiadendron giganteum HOM05D005620 ORTHO05D002193 4.3e-43 179.9 335 37.0
BcaC06g34961 Brassica carinata HOM05D005620 ORTHO05D002193 2.1e-42 177.6 117 69.2
CBR_g30450 Chara braunii HOM05D005620 ORTHO05D002193 5.8e-40 169.5 192 45.3
unitig_748.g7228 Utricularia gibba HOM05D005620 ORTHO05D002193 6.4e-39 166.0 93 78.5
QL07p005077 Quercus lobata HOM05D005620 ORTHO05D002193 1.9e-38 164.5 96 78.1
Oeu029712.1 Olea europaea HOM05D005620 ORTHO05D002193 7.1e-38 162.5 95 74.7
AUR62026122 Chenopodium quinoa HOM05D005620 ORTHO05D002193 5.2e-33 146.4 84 81.0
BolC7t42658H Brassica oleracea HOM05D005620 ORTHO05D002193 2.1e-26 124.4 94 66.0
CAN.G1442.1 Capsicum annuum HOM05D005620 ORTHO05D002193 2.4e-25 120.9 114 53.5
Cre03.g175850 Chlamydomonas reinhardtii HOM05D005620 ORTHO05D002193 1.2e-24 118.6 168 41.1
MCO09G604 Micromonas commoda HOM05D005620 ORTHO05D002193 2.6e-24 117.5 154 41.6
BolC6t36428H Brassica oleracea HOM05D005620 ORTHO05D002193 3.4e-24 117.1 113 56.6
BolC6t38904H Brassica oleracea HOM05D005620 ORTHO05D002193 9.9e-24 115.5 94 62.8
Zm00001eb408570 Zea mays HOM05D004043 ORTHO05D002193 3.5e-21 107.1 80 58.8
Haze_26268 Corylus avellana HOM05D005620 ORTHO05D002193 1.6e-18 98.2 140 40.7
SEGI_33391 Sequoiadendron giganteum HOM05D005620 ORTHO05D002193 4.8e-18 96.7 57 63.2
MCO07G069 Micromonas commoda HOM05D005620 ORTHO05D002193 1.4e-17 95.1 140 41.4
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.4e-17 95.1 51 80.4
Eucgr.F00952 Eucalyptus grandis HOM05D005620 ORTHO05D002193 2.0e-16 91.3 50 78.0
Ciclev10005831m.g Citrus clementina HOM05D005620 ORTHO05D002193 7.6e-16 89.4 201 36.3
vmacro03183 Vaccinium macrocarpon HOM05D033709 ORTHO05D002193 1.7e-15 88.2 134 45.5
COL.COLO4_33915 Corchorus olitorius HOM05D005620 ORTHO05D002193 2.9e-15 87.4 67 58.2
Rhsim03G0031100 Rhododendron simsii HOM05D005620 ORTHO05D002193 3.8e-15 87.0 56 67.9
Zm00001eb341560 Zea mays HOM05D005620 ORTHO05D002193 1.1e-14 85.5 53 67.9
PRCOL_00006578 Prasinoderma coloniale HOM05D005620 ORTHO05D002193 6.0e-13 79.7 177 35.6
vmacro18320 Vaccinium macrocarpon HOM05D033709 ORTHO05D051542 1.8e-12 78.2 86 48.8
AT3G61030 Arabidopsis thaliana HOM05D000524 ORTHO05D000381 1.5e-11 75.1 140 37.9
AT3G60950 Arabidopsis thaliana HOM05D000524 ORTHO05D000381 1.9e-11 74.7 60 63.3
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 2.5e-11 74.3 144 36.1
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.6e-10 71.6 180 30.6
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 3.7e-10 70.5 180 30.6
RcHm_v2.0_Chr3g0484441 Rosa chinensis HOM05D005620 ORTHO05D002193 3.7e-10 70.5 35 85.7
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 3.1e-09 67.4 180 29.4
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 6.9e-09 66.2 180 29.4
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 9.0e-09 65.9 179 29.1
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 2.6e-08 64.3 178 29.2
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.4e-08 63.9 173 28.9
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 5.8e-08 63.2 173 30.1
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 7.6e-08 62.8 177 28.2
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 1.0e-07 62.4 81 43.2
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 1.0e-07 62.4 190 30.0
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 1.0e-07 62.4 182 29.1
unitig_32.g11163 Utricularia gibba HOM05D006807 ORTHO05D008528 1.0e-07 62.4 183 26.2
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 1.3e-07 62.0 191 26.7
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 1.7e-07 61.6 101 37.6
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 1.7e-07 61.6 87 41.4
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 2.2e-07 61.2 84 41.7
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 2.2e-07 61.2 88 40.9
CSS0019908 Camellia sinensis var. sinensis HOM05D006807 ORTHO05D008528 2.2e-07 61.2 206 26.2
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 2.2e-07 61.2 182 29.1
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 2.9e-07 60.8 180 28.9
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 2.9e-07 60.8 180 27.8
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 4.9e-07 60.1 180 28.9
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 4.9e-07 60.1 176 27.3
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 4.9e-07 60.1 182 28.0
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 6.5e-07 59.7 84 45.2
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 1.9e-06 58.2 87 39.1
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 1.9e-06 58.2 87 39.1
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 1.9e-06 58.2 87 39.1
HPP92_021433 Vanilla planifolia HOM05D006807 ORTHO05D008528 1.9e-06 58.2 159 26.4
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 2.5e-06 57.8 87 39.1
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 2.5e-06 57.8 85 42.4
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 2.5e-06 57.8 85 41.2
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 2.5e-06 57.8 86 40.7
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 3.2e-06 57.4 85 40.0
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 3.2e-06 57.4 180 26.7
vmacro05863 Vaccinium macrocarpon HOM05D033709 ORTHO05D426786 3.2e-06 57.4 125 34.4
vmacro18229 Vaccinium macrocarpon HOM05D001690 ORTHO05D051542 3.2e-06 57.4 168 30.4
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 4.2e-06 57.0 86 40.7
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 5.5e-06 56.6 82 40.2
SHI17323 Sapria himalayana HOM05D006807 ORTHO05D008528 5.5e-06 56.6 186 24.7
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 5.5e-06 56.6 85 40.0
AUR62025746 Chenopodium quinoa HOM05D006807 ORTHO05D008528 7.1e-06 56.2 182 25.3
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 7.1e-06 56.2 88 39.8
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 7.1e-06 56.2 85 40.0
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 9.3e-06 55.8 183 27.9


User provided reference genes

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