Gene: Solyc03g033530.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc03g033530.4
- Transcript Identifier Solyc03g033530.4.1
- Gene Type Coding gene
- Location SL4.0ch03 : 4935024-4941580 : negative
Gene Family Information
- ID HOM05D005767
- #Genes/#Species 135/92
- Phylogenetic origin
- ID ORTHO05D006785
- #Genes/#Species 138/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc03g033530.4.1
- uniprot A0A3Q7FFT9
- gene_id Solyc03g033530
Descriptions
- Description DNA-(apurinic or apyrimidinic site) lyase (AHRD V3.3 *** A0A2G2ZMB4_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0080111 | ISO | PLAZA Integrative Orthology | DNA demethylation | AT4G36050 |
GO:0006284 | IBA | GOA Database | base-excision repair | |
GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
GO:0006281 | IEA | GOA Database | DNA repair | |
GO:0006281 | IEA | InterPro | DNA repair | |
GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0004518 | IEA | GOA Database | nuclease activity | |
GO:0004518 | IEA | InterPro | nuclease activity | |
GO:0046403 | ISO | PLAZA Integrative Orthology | polynucleotide 3'-phosphatase activity | AT4G36050 |
GO:0004527 | ISO | PLAZA Integrative Orthology | exonuclease activity | AT4G36050 |
GO:0008311 | IBA | GOA Database | double-stranded DNA 3'-5' exodeoxyribonuclease activity | |
GO:0004528 | IBA | GOA Database | phosphodiesterase I activity | |
GO:0003906 | IBA | GOA Database | DNA-(apurinic or apyrimidinic site) endonuclease activity | |
GO:0008270 | IEA | GOA Database | zinc ion binding | |
GO:0008270 | IEA | InterPro | zinc ion binding | |
GO:0003824 | IEA | GOA Database | catalytic activity | |
GO:0003824 | IEA | InterPro | catalytic activity | |
GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
14.5.10.2 | DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (APE2) |