Gene: COL.COLO4_21299

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_21299
  • Transcript Identifier COL.rna20054
  • Gene Type Coding gene
  • Location AWUE01017625.1 : 5764-11504 : positive

Gene Family Information

  • ID HOM05D005620
  • #Genes/#Species 137/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna20054
  • GenBank OMO86105.1
  • id gene21271
  • gene_name COLO4_21299
  • uniprot A0A1R3IU59

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT2G41460
GO:0033683
ISO
PLAZA Integrative Orthologynucleotide-excision repair, DNA incision AT2G41460
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0003906
ISO
PLAZA Integrative OrthologyDNA-(apurinic or apyrimidinic site) endonuclease activity AT2G41460
GO:0016791
ISO
PLAZA Integrative Orthologyphosphatase activity AT2G41460
GO:0004528
ISO
PLAZA Integrative Orthologyphosphodiesterase I activity AT2G41460
GO:0008408
ISO
PLAZA Integrative Orthology3'-5' exonuclease activity AT2G41460
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042644
ISO
PLAZA Integrative Orthologychloroplast nucleoid AT2G41460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005135 Endonuclease/exonuclease/phosphatase
IPR036361 SAP domain superfamily
IPR004808 AP endonuclease 1
IPR036691 Endonuclease/exonuclease/phosphatase superfamily
IPR003034 SAP domain
Mapman id Description
14.5.10.3 DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (ARP)