Gene: Sopen03g006310

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g006310
  • Transcript Identifier Sopen03g006310.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 5183609-5192687 : negative

Gene Family Information

  • ID HOM05D005767
  • #Genes/#Species 135/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g006310.1

Descriptions

  • Description endonuclease/exonuclease/phosphatase family protein | FUNCTIONS IN: zinc ion binding, nuclease activity | INVOLVED IN: DNA repair | LOCATED IN: cellular_component unknown | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase , Exodeoxyribonuclease III xth , Zinc finger, GRF-type | BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0080111
ISO
PLAZA Integrative OrthologyDNA demethylation AT4G36050

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
InterPronuclease activity
GO:0008270
IEA
InterProzinc ion binding
GO:0003824
IEA
InterProcatalytic activity
GO:0004527
ISO
PLAZA Integrative Orthologyexonuclease activity AT4G36050
GO:0046403
ISO
PLAZA Integrative Orthologypolynucleotide 3'-phosphatase activity AT4G36050

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036691 Endonuclease/exonuclease/phosphatase superfamily
IPR004808 AP endonuclease 1
IPR010666 Zinc finger, GRF-type
IPR005135 Endonuclease/exonuclease/phosphatase
Mapman id Description
14.5.10.2 DNA damage response.base excision repair (BER).apurinic/apyrimidinic (AP) endonuclease activities.AP-endonuclease (APE2)