Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 3.4e-195 684.9 360 100.0
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.6e-72 277.3 271 56.8
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 4.8e-72 275.8 259 60.6
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 3.2e-68 263.1 199 69.3
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 5.4e-68 262.3 304 52.0
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.5e-67 259.6 197 69.5
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 3.0e-66 256.5 305 51.1
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.9e-66 256.1 196 70.4
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 6.6e-66 255.4 275 55.3
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 6.6e-66 255.4 258 57.0
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 8.7e-66 255.0 305 50.8
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.5e-65 254.2 194 69.6
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.5e-65 254.2 269 55.0
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.9e-65 253.8 282 52.5
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 1.9e-65 253.8 269 55.0
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.5e-65 253.4 195 67.2
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 5.6e-65 252.3 305 50.2
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 7.3e-65 251.9 213 64.3
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 7.3e-65 251.9 274 53.3
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 7.3e-65 251.9 276 55.1
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.3e-64 251.1 196 69.4
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.6e-64 250.8 275 52.7
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 2.1e-64 250.4 288 51.4
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 6.2e-64 248.8 257 55.6
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.2e-64 248.8 196 68.9
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.1e-63 248.1 257 55.6
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 1.4e-63 247.7 285 50.5
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 1.4e-63 247.7 212 63.2
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.8e-63 247.3 226 62.8
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.8e-63 247.3 252 56.0
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 4.0e-63 246.1 216 62.0
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 5.3e-63 245.7 224 62.5
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 5.3e-63 245.7 224 62.5
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 5.3e-63 245.7 263 54.8
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 6.9e-63 245.4 194 67.5
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 6.9e-63 245.4 285 49.5
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 9.0e-63 245.0 203 65.0
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 9.0e-63 245.0 292 51.7
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.6e-62 243.4 233 60.9
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 5.8e-62 242.3 287 53.0
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.8e-62 242.3 282 50.7
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 9.9e-62 241.5 193 68.9
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.3e-61 241.1 196 63.3
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.2e-61 240.4 276 52.9
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 4.9e-61 239.2 201 66.2
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.1e-60 238.0 298 48.3
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 1.4e-60 237.7 201 64.2
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.4e-60 236.9 290 47.2
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 3.2e-60 236.5 197 65.5
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 3.2e-60 236.5 201 64.2
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 4.2e-60 236.1 287 51.9
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 5.5e-60 235.7 198 64.1
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 5.5e-60 235.7 280 50.0
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 5.5e-60 235.7 255 55.3
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 5.5e-60 235.7 297 49.2
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 2.1e-59 233.8 280 48.9
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 2.7e-59 233.4 157 75.2
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.7e-59 233.4 149 76.5
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 4.6e-59 232.6 211 60.7
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 6.0e-59 232.3 158 75.9
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 7.9e-59 231.9 289 50.2
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-58 231.1 190 66.8
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 2.3e-58 230.3 151 78.1
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 3.0e-58 229.9 186 67.7
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 3.9e-58 229.6 195 63.1
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 3.9e-58 229.6 287 47.0
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 5.1e-58 229.2 201 61.7
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 8.7e-58 228.4 174 67.2
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 8.7e-58 228.4 199 62.8
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.1e-57 228.0 202 62.4
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.9e-57 227.3 184 65.2
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 2.5e-57 226.9 262 50.0
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 3.3e-57 226.5 138 79.7
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 3.3e-57 226.5 138 79.7
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 3.3e-57 226.5 138 79.7
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 3.3e-57 226.5 140 76.4
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 4.3e-57 226.1 187 65.2
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 4.3e-57 226.1 137 80.3
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 5.6e-57 225.7 193 63.7
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 5.6e-57 225.7 265 51.7
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 7.4e-57 225.3 174 66.1
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 9.6e-57 224.9 301 47.2
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 9.6e-57 224.9 287 47.4
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.3e-56 224.6 191 64.9
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 2.8e-56 223.4 139 79.1
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 6.2e-56 222.2 177 65.5
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 1.1e-55 221.5 138 78.3
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.4e-55 221.1 137 78.8
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 1.4e-55 221.1 153 72.5
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 2.4e-55 220.3 187 61.5
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 3.1e-55 219.9 185 65.9
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 3.1e-55 219.9 131 80.9
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.1e-55 219.9 131 80.9
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 4.0e-55 219.5 172 66.9
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 4.0e-55 219.5 172 66.9
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.9e-55 218.8 131 80.2
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.0e-55 218.4 195 60.0
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 9.0e-55 218.4 285 48.4
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 9.0e-55 218.4 263 48.3
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 2.6e-54 216.9 187 59.9
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.8e-54 215.7 175 63.4
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 2.9e-53 213.4 175 62.9
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 6.5e-53 212.2 142 73.9
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 1.4e-52 211.1 234 52.6
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 5.5e-52 209.1 264 48.5
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 5.5e-52 209.1 315 43.8
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 4.6e-51 206.1 276 45.7
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 2.3e-50 203.8 403 35.7
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.9e-50 203.0 201 57.2
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 2.5e-49 200.3 244 48.0
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 3.3e-49 199.9 298 43.3
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 196.8 152 65.8
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 196.8 152 65.8
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 196.8 152 65.8
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 196.8 152 65.8
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 196.8 152 65.8
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 196.8 152 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.8e-48 196.8 152 65.8
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 2.4e-47 193.7 263 49.4
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.1e-47 193.4 204 55.4
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 6.9e-47 192.2 188 60.6
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 2.0e-46 190.7 129 69.0
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.6e-46 190.3 157 63.7
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 6.5e-45 185.7 140 63.6
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 8.4e-45 185.3 167 64.1
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 1.9e-44 184.1 223 49.8
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 3.5e-43 179.9 123 68.3
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.0e-42 178.3 219 50.2
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.9e-41 174.1 100 83.0
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 3.3e-41 173.3 127 65.4
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.8e-34 151.0 321 35.8
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.5e-33 147.1 131 58.8
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 6.3e-32 142.5 225 42.7
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 7.2e-20 102.4 59 78.0
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 7.2e-20 102.4 59 78.0
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 2.1e-19 100.9 132 51.5
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 3.3e-17 93.6 117 46.2
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 5.9e-14 82.8 77 57.1
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.0e-13 82.0 47 78.7
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 2.1e-11 74.3 58 67.2
Glyma.11G172800 Glycine max HOM05D003203 ORTHO05D003526 4.0e-10 70.1 199 32.7
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 7.5e-09 65.9 89 46.1
Cre07.g352800 Chlamydomonas reinhardtii HOM05D003203 ORTHO05D003526 3.7e-08 63.5 142 32.4
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 4.8e-08 63.2 88 50.0
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 3.1e-07 60.5 180 31.1
Nitab4.5_0010520g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.0e-06 57.8 60 56.7
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 7.7e-06 55.8 30 76.7


User provided reference genes

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