Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023437 Daucus carota HOM05D003015 ORTHO05D003733 1.8e-66 255.8 126 100.0
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 5.8e-17 91.3 73 63.0
SGA_v2.0_scaffold8G04438 Striga asiatica HOM05D003015 ORTHO05D003733 1.3e-16 90.1 73 61.6
DCAR_006673 Daucus carota HOM05D003015 ORTHO05D003733 2.2e-16 89.4 73 61.6
RcHm_v2.0_Chr4g0446281 Rosa chinensis HOM05D003015 ORTHO05D003733 2.2e-16 89.4 73 60.3
Lj5A264T26 Lonicera japonica HOM05D003015 ORTHO05D003733 2.9e-16 89.0 73 61.6
Oeu045924.1 Olea europaea HOM05D003015 ORTHO05D003733 2.9e-16 89.0 73 61.6
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 2.9e-16 89.0 73 58.9
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 3.8e-16 88.6 73 61.6
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 3.8e-16 88.6 73 61.6
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 3.8e-16 88.6 73 61.6
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 6.4e-16 87.8 73 60.3
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 6.4e-16 87.8 73 58.9
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 6.4e-16 87.8 73 58.9
Lsat_1_v5_gn_9_120400 Lactuca sativa HOM05D003015 ORTHO05D003733 6.4e-16 87.8 73 58.9
Peaxi162Scf00130g01131 Petunia axillaris HOM05D003015 ORTHO05D003733 6.4e-16 87.8 73 60.3
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 8.4e-16 87.4 73 58.9
Duzib168G1740 Durio zibethinus HOM05D003015 ORTHO05D003733 8.4e-16 87.4 73 58.9
Manes.01G165200 Manihot esculenta HOM05D003015 ORTHO05D003733 8.4e-16 87.4 73 61.6
Solyc04g017710.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 8.4e-16 87.4 73 58.9
Sopen04g008800 Solanum pennellii HOM05D003015 ORTHO05D003733 8.4e-16 87.4 73 58.9
TWI31G1171 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 8.4e-16 87.4 73 61.6
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 8.4e-16 87.4 73 61.6
HanXRQChr11g0338781 Helianthus annuus HOM05D003015 ORTHO05D003733 1.1e-15 87.0 73 58.9
FvH4_4g11590 Fragaria vesca HOM05D003015 ORTHO05D003733 1.4e-15 86.7 73 57.5
FAN07G1978 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.4e-15 86.7 73 57.5
FAN12G3854 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.4e-15 86.7 73 57.5
FAN17G0963 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.4e-15 86.7 73 57.5
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 1.4e-15 86.7 73 58.9
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 57.5
Aqoxy1G00721 Aquilegia oxysepala HOM05D003015 ORTHO05D003733 1.9e-15 86.3 84 51.2
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 58.9
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 57.5
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 57.5
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 58.9
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 57.5
Nn2g13601 Nelumbo nucifera HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 58.9
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 58.9
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 58.9
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 58.9
SGA_v2.0_scaffold42G15905 Striga asiatica HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 58.9
Thecc.01G073800 Theobroma cacao HOM05D003015 ORTHO05D003733 1.9e-15 86.3 73 57.5
HanXRQChr01g0027201 Helianthus annuus HOM05D003015 ORTHO05D003733 2.4e-15 85.9 73 57.5
GSVIVG01024807001 Vitis vinifera HOM05D003015 ORTHO05D003733 2.4e-15 85.9 73 57.5
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 3.2e-15 85.5 86 48.8
COL.COLO4_11589 Corchorus olitorius HOM05D003015 ORTHO05D003733 3.2e-15 85.5 73 57.5
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 3.2e-15 85.5 73 60.3
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 3.2e-15 85.5 73 58.9
Sed0025661 Sechium edule HOM05D003015 ORTHO05D003733 3.2e-15 85.5 73 56.2
unitig_747.g21268 Utricularia gibba HOM05D003015 ORTHO05D003733 3.2e-15 85.5 73 58.9
Cc02_g23110 Coffea canephora HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 57.5
Migut.N00829 Erythranthe guttata HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 58.9
Eucgr.J01948 Eucalyptus grandis HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 56.2
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 58.9
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 57.5
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 57.5
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 57.5
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 56.2
SHI06627 Sapria himalayana HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 58.9
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 4.2e-15 85.1 73 58.9
Hma1.2p1_0227F.1_g096180 Hydrangea macrophylla HOM05D003015 ORTHO05D003733 5.4e-15 84.7 73 56.2
MD01G1110000 Malus domestica HOM05D003015 ORTHO05D003733 5.4e-15 84.7 73 57.5
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 5.4e-15 84.7 73 57.5
Manes.02G122600 Manihot esculenta HOM05D003015 ORTHO05D003733 5.4e-15 84.7 73 58.9
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 7.1e-15 84.3 73 60.3
ATR0584G134 Amborella trichopoda HOM05D003015 ORTHO05D003733 9.3e-15 84.0 73 56.2
Dinv36322 Davidia involucrata HOM05D003015 ORTHO05D003733 9.3e-15 84.0 73 56.2
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 1.2e-14 83.6 73 54.8
ECA240G0521 Erigeron canadensis HOM05D003015 ORTHO05D003733 1.2e-14 83.6 73 56.2
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 1.2e-14 83.6 73 57.5
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 1.2e-14 83.6 73 57.5
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 1.2e-14 83.6 73 57.5
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 1.2e-14 83.6 73 57.5
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 1.2e-14 83.6 73 58.9
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 56.2
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 56.2
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 54.8
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 54.8
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 56.2
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 56.2
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 54.8
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 1.6e-14 83.2 73 56.2
ATR0584G244 Amborella trichopoda HOM05D003015 ORTHO05D003733 2.1e-14 82.8 73 54.8
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 2.1e-14 82.8 73 56.2
CSS0005232 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 2.1e-14 82.8 73 56.2
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 2.1e-14 82.8 73 57.5
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 2.1e-14 82.8 73 56.2
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 2.7e-14 82.4 70 55.7
HPP92_010595 Vanilla planifolia HOM05D003015 ORTHO05D003733 2.7e-14 82.4 73 57.5
Dinv14472 Davidia involucrata HOM05D003015 ORTHO05D003733 3.5e-14 82.0 73 56.2
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 3.5e-14 82.0 73 53.4
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 4.6e-14 81.6 73 53.4
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 4.6e-14 81.6 73 57.5
Rhsim13G0073800 Rhododendron simsii HOM05D003015 ORTHO05D003733 4.6e-14 81.6 73 54.8
vmacro02998 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 4.6e-14 81.6 73 54.8
vmacro06938 Vaccinium macrocarpon HOM05D003015 ORTHO05D003733 4.6e-14 81.6 73 54.8
arahy.Tifrunner.gnm1.ann1.42246I Arachis hypogaea HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 57.5
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 54.8
CiPaw.14G062400 Carya illinoinensis HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 54.8
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 53.4
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 57.5
DCAR_019355 Daucus carota HOM05D003015 ORTHO05D003733 6.0e-14 81.3 74 58.1
Glyma.13G076300 Glycine max HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 57.5
Glyma.20G050200 Glycine max HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 57.5
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 57.5
Potri.009G041400 Populus trichocarpa HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 54.8
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 54.8
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 54.8
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 54.8
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 6.0e-14 81.3 73 57.5
Glyma.14G010200 Glycine max HOM05D003015 ORTHO05D003733 7.9e-14 80.9 73 57.5
Mapoly0103s0034 Marchantia polymorpha HOM05D003015 ORTHO05D003733 7.9e-14 80.9 73 56.2
Ca_16230_v3 Cicer arietinum L. HOM05D003015 ORTHO05D003733 1.0e-13 80.5 73 56.2
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 1.3e-13 80.1 73 56.2
Medtr3g079200 Medicago truncatula HOM05D003015 ORTHO05D003733 1.3e-13 80.1 73 56.2
Phvul.008G282900 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 1.3e-13 80.1 73 56.2
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 1.3e-13 80.1 73 54.8
TPR.G14378 Trifolium pratense HOM05D003015 ORTHO05D003733 1.3e-13 80.1 73 56.2
COL.COLO4_19088 Corchorus olitorius HOM05D003015 ORTHO05D003733 1.7e-13 79.7 70 57.1
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 1.7e-13 79.7 73 54.8
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 1.7e-13 79.7 73 54.8
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 1.7e-13 79.7 73 56.2
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 1.7e-13 79.7 73 52.1
VMungo0647G0404 Vigna mungo HOM05D003015 ORTHO05D003733 1.7e-13 79.7 73 56.2
COL.COLO4_32624 Corchorus olitorius HOM05D003015 ORTHO05D003733 2.3e-13 79.3 74 56.8
Psat5g112760 Pisum sativum HOM05D003015 ORTHO05D003733 2.3e-13 79.3 73 54.8
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 2.3e-13 79.3 73 53.4
AagrBONN_evm.TU.Sc2ySwM_117.2733 Anthoceros agrestis HOM05D003015 ORTHO05D003733 3.0e-13 79.0 73 52.1
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 3.9e-13 78.6 76 55.3
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 8.7e-13 77.4 73 52.1
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 1.1e-12 77.0 73 52.1
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 1.1e-12 77.0 73 52.1
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 1.1e-12 77.0 73 52.1
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 1.1e-12 77.0 73 52.1
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 1.1e-12 77.0 73 52.1
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 1.1e-12 77.0 73 52.1
TAR402G0004 Trochodendron aralioides HOM05D003015 ORTHO05D003733 1.5e-12 76.6 84 44.0
Aa31LG1G6670 Aethionema arabicum HOM05D003015 ORTHO05D003733 1.9e-12 76.3 73 53.4
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 1.9e-12 76.3 73 52.1
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 1.9e-12 76.3 73 52.1
A08p35690 Brassica napus HOM05D002022 ORTHO05D002056 1.9e-12 76.3 73 52.1
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 1.9e-12 76.3 73 52.1
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 1.9e-12 76.3 73 52.1
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 1.9e-12 76.3 73 52.1
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 3.3e-12 75.5 73 50.7
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 3.3e-12 75.5 73 50.7
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 3.3e-12 75.5 73 50.7
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 4.3e-12 75.1 73 50.7
SMO239G0105 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 4.3e-12 75.1 73 52.1
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 4.3e-12 75.1 73 52.1
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 5.6e-12 74.7 73 50.7
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 5.6e-12 74.7 73 50.7
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 5.6e-12 74.7 73 49.3
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 7.4e-12 74.3 73 50.7
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 7.4e-12 74.3 73 47.9
SEGI_12275 Sequoiadendron giganteum HOM05D003015 ORTHO05D003733 7.4e-12 74.3 73 49.3
Pp3c2_11360 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.3e-11 73.6 73 50.7
SMO307G0058 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 2.1e-11 72.8 70 51.4
RcHm_v2.0_Chr1g0337351 Rosa chinensis HOM05D003015 ORTHO05D003733 2.8e-11 72.4 72 52.8
FAN06G0288 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.8e-11 71.6 71 53.5
FAN10G3991 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.8e-11 71.6 71 53.5
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 6.2e-11 71.2 73 41.1
SMO001G0006 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 1.1e-10 70.5 73 50.7
FvH4_7g07370 Fragaria vesca HOM05D003015 ORTHO05D003733 1.4e-10 70.1 71 52.1
Pp3c14_6200 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.8e-10 69.7 70 50.0
Pp3c14_6210 Physcomitrium patens HOM05D003015 ORTHO05D003733 1.8e-10 69.7 70 50.0
Thhalv10015561m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 3.1e-10 68.9 73 47.9
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 5.3e-10 68.2 74 44.6
Nitab4.5_0000082g0440 Nicotiana tabacum HOM05D003015 ORTHO05D003733 6.9e-10 67.8 89 48.3
CBR_g479 Chara braunii HOM05D003015 ORTHO05D003733 9.0e-10 67.4 86 38.4
PSO832G4426 Papaver somniferum HOM05D003015 ORTHO05D003733 2.6e-09 65.9 73 43.8
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 3.4e-09 65.5 74 44.6
Cre02.g075650 Chlamydomonas reinhardtii HOM05D003015 ORTHO05D003733 7.6e-09 64.3 80 45.0
AT5G07060 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 9.9e-09 63.9 65 44.6
PSO063G2829 Papaver somniferum HOM05D003015 ORTHO05D003733 9.9e-09 63.9 73 43.8
AT5G04210 Arabidopsis thaliana HOM05D003015 ORTHO05D017435 3.2e-07 58.9 73 42.5
MCO09G817 Micromonas commoda HOM05D003015 ORTHO05D003733 7.1e-07 57.8 74 36.5
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 2.1e-06 56.2 83 36.1
PRCOL_00007001 Prasinoderma coloniale HOM05D003015 ORTHO05D003733 6.0e-06 54.7 75 38.7
A10p31830 Brassica napus HOM05D003015 ORTHO05D042787 7.9e-06 54.3 55 41.8
BraA10t45228Z Brassica rapa HOM05D003015 ORTHO05D042787 7.9e-06 54.3 55 41.8


User provided reference genes

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