Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 0.0e+00 1601.3 802 100.0
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1080.1 806 67.0
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 2.3e-308 1062.0 808 66.3
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 6.9e-305 1050.4 794 66.5
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.3e-300 1036.2 765 66.4
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 6.6e-300 1033.9 753 67.1
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 2.5e-299 1031.9 751 67.0
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 1.1e-297 1026.5 736 68.1
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.0e-296 1022.3 774 66.3
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.0e-296 1022.3 774 66.3
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 2.3e-292 1008.8 728 68.1
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 4.3e-291 1004.6 760 64.9
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 4.5e-288 994.6 759 64.7
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 5.8e-288 994.2 752 66.0
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.3e-287 993.0 755 65.0
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.9e-287 991.9 735 65.7
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 7.1e-286 987.3 727 66.7
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 9.3e-286 986.9 789 64.0
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.7e-285 985.3 788 60.8
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 7.9e-285 983.8 727 66.9
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 6.2e-282 974.2 740 64.1
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 2.0e-280 969.1 752 63.0
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 3.4e-280 968.4 771 62.0
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 5.8e-280 967.6 755 63.3
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.2e-279 965.7 763 62.9
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 3.8e-279 964.9 761 62.5
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 8.4e-279 963.8 773 62.4
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-278 963.4 654 69.7
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 7.1e-278 960.7 784 62.0
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 3.5e-277 958.4 719 65.9
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 7.9e-277 957.2 779 62.9
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.9e-277 957.2 778 60.7
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.9e-276 954.9 776 61.7
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.8e-274 948.7 719 64.7
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 8.2e-274 947.2 758 60.6
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.4e-273 946.4 775 61.3
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.4e-273 946.4 778 61.1
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 1.8e-273 946.0 722 63.7
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.4e-273 945.7 741 62.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 9.0e-273 943.7 766 61.1
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 9.0e-273 943.7 689 64.4
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 4.5e-272 941.4 782 60.9
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 2.9e-271 938.7 770 59.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.8e-271 938.3 758 60.2
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 3.8e-271 938.3 767 60.5
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 6.5e-271 937.6 760 60.4
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 6.5e-271 937.6 751 62.3
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.1e-270 936.8 784 59.9
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.9e-270 936.0 786 60.3
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.2e-269 933.3 694 64.8
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 6.1e-269 931.0 682 63.5
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 7.9e-269 930.6 773 59.9
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.1e-267 926.8 794 58.9
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.5e-267 925.6 792 59.1
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 3.3e-267 925.2 707 62.0
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.7e-266 922.9 787 60.4
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.7e-266 922.9 793 58.9
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.7e-266 921.8 707 65.3
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 4.8e-266 921.4 710 63.4
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.1e-265 920.2 680 63.2
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 4.5e-264 914.8 789 59.4
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.7e-263 912.9 680 62.5
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.8e-260 902.9 693 63.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.6e-259 899.0 684 62.3
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 4.4e-259 898.3 677 61.7
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 5.7e-259 897.9 679 62.3
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.3e-258 896.7 750 58.3
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.2e-255 885.9 745 58.7
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 2.2e-255 885.9 744 58.5
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 5.5e-254 881.3 663 64.3
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.6e-253 878.6 679 61.4
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 8.0e-253 877.5 742 57.4
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 1.1e-251 873.6 747 57.4
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.8e-249 866.3 771 56.3
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.4e-249 865.9 742 56.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 3.1e-249 865.5 758 57.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.2e-248 863.6 757 56.3
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.0e-248 862.8 741 56.7
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 2.0e-248 862.8 733 57.2
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 2.0e-248 862.8 733 57.2
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 2.0e-248 862.8 733 57.2
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 4.5e-248 861.7 657 63.9
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.4e-244 850.1 660 60.5
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.2e-242 842.8 692 58.8
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.2e-238 828.6 723 56.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 7.2e-238 827.8 714 57.6
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 1.7e-234 816.6 690 57.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 2.5e-230 802.7 773 52.0
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.1e-229 799.7 624 62.7
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.3e-223 780.4 656 55.6
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.3e-223 780.4 680 55.6
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.6e-221 773.5 585 65.5
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 3.1e-220 769.2 698 53.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.1e-217 758.8 664 56.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.7e-210 736.9 609 57.3
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.2e-210 736.5 543 65.2
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.4e-209 733.8 768 51.6
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 8.4e-178 628.2 766 43.1
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.5e-174 616.7 522 60.0
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 2.4e-172 610.1 630 49.0
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 5.7e-166 589.0 463 62.0
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 7.1e-161 572.0 707 43.4
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 1.8e-143 514.2 418 60.8
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 6.1e-128 462.6 536 48.7
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.6e-112 411.4 662 40.5
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-104 385.2 484 47.3
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 2.8e-104 384.0 304 63.2
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.6e-91 340.1 660 32.4
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.0e-90 337.4 348 54.6
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 5.1e-82 310.1 315 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.1e-80 304.7 658 31.5
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 7.1e-76 289.7 345 51.6
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 4.0e-71 273.9 706 26.6
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 2.9e-69 267.7 660 27.3
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.3e-56 225.7 688 25.6
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.5e-52 211.5 233 51.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 6.5e-45 186.8 159 59.7
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.6e-43 182.2 180 51.7
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.1e-41 176.0 670 24.0
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-38 166.0 198 47.5
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.1e-25 122.9 70 77.1
DCAR_016664 Daucus carota HOM05D006129 ORTHO05D007446 7.7e-22 110.2 94 60.6
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 6.3e-16 90.5 87 55.2
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 6.3e-16 90.5 716 19.8
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 4.1e-15 87.8 60 61.7
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.9e-12 79.0 51 68.6
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.2e-11 76.3 53 67.9
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 7.5e-09 67.0 390 20.8
SEGI_09142 Sequoiadendron giganteum HOM05D002649 ORTHO05D002838 4.1e-07 61.2 350 22.9
FAN11G1115 Fragaria x ananassa HOM05D006354 ORTHO05D007773 1.2e-06 59.7 278 19.4
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 5.9e-06 57.4 174 23.0
Ciclev10004807m.g Citrus clementina HOM05D001779 ORTHO05D001753 7.7e-06 57.0 152 27.6
MD14G1187700 Malus domestica HOM05D007383 ORTHO05D009254 7.7e-06 57.0 162 25.9


User provided reference genes

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