Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 4.6e-209 731.1 399 100.0
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 3.0e-200 701.8 399 95.7
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 1.7e-187 659.4 400 85.2
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 8.7e-184 647.1 379 92.9
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 4.1e-149 531.9 398 76.1
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 4.5e-148 528.5 404 69.3
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 1.0e-147 527.3 398 69.3
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 3.8e-147 525.4 402 72.1
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 1.2e-145 520.4 402 71.6
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.6e-145 520.0 405 67.4
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 1.6e-145 520.0 407 68.3
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 2.7e-145 519.2 403 68.5
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 8.0e-145 517.7 403 69.0
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 1.4e-144 516.9 335 76.7
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 2.0e-143 513.1 409 67.0
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 9.7e-143 510.8 325 78.5
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.7e-142 510.0 405 66.7
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 2.2e-142 509.6 394 68.5
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 6.3e-142 508.1 328 77.4
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 1.8e-141 506.5 412 68.2
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 2.4e-141 506.1 337 75.7
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 3.1e-141 505.8 328 75.9
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 5.3e-141 505.0 342 74.9
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 1.6e-140 503.4 342 74.3
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 1.6e-140 503.4 342 74.3
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 2.6e-140 502.7 337 74.8
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 5.9e-140 501.5 403 71.7
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 7.7e-140 501.1 394 73.1
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 7.7e-140 501.1 324 77.2
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 2.2e-139 499.6 332 75.6
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 3.8e-139 498.8 329 75.7
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 3.8e-139 498.8 394 66.2
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.5e-138 496.9 329 75.4
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 5.5e-138 495.0 327 74.6
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 5.5e-138 495.0 394 67.3
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 1.6e-137 493.4 334 73.1
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 3.6e-137 492.3 408 65.7
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 1.0e-136 490.7 320 75.9
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 3.0e-136 489.2 413 64.9
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 3.0e-136 489.2 394 65.5
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 1.5e-135 486.9 343 72.0
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 2.6e-135 486.1 332 73.2
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 5.7e-135 485.0 412 62.6
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 7.5e-135 484.6 415 63.9
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 7.5e-135 484.6 329 73.9
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 1.7e-134 483.4 342 70.8
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 1.7e-134 483.4 340 71.5
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 3.7e-134 482.3 347 70.6
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 3.7e-134 482.3 351 69.2
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 4.1e-133 478.8 341 70.7
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 5.4e-133 478.4 344 70.3
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 9.1e-133 477.6 342 71.1
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 9.1e-133 477.6 327 72.8
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 2.2e-131 473.0 324 73.5
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 3.8e-131 472.2 337 70.0
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.1e-130 470.7 307 76.9
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 2.5e-130 469.5 400 65.5
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 4.2e-130 468.8 280 82.1
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 9.4e-130 467.6 332 71.1
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 3.6e-129 465.7 333 70.0
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 3.6e-129 465.7 390 62.8
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 4.7e-129 465.3 395 62.5
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 6.1e-129 464.9 345 68.4
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 8.0e-129 464.5 332 69.9
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 1.0e-128 464.2 333 69.7
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 1.0e-128 464.2 333 69.7
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 1.0e-128 464.2 418 60.8
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 1.4e-128 463.8 405 63.5
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 1.4e-128 463.8 330 69.7
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 2.3e-128 463.0 370 67.3
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 3.0e-128 462.6 320 73.8
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 4.0e-128 462.2 408 65.0
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 6.8e-128 461.5 291 79.7
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 2.6e-127 459.5 315 74.6
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 4.4e-127 458.8 352 65.6
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 5.7e-127 458.4 356 67.1
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 1.4e-125 453.8 323 71.2
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 3.5e-124 449.1 305 74.1
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 1.3e-123 447.2 305 74.1
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 1.3e-123 447.2 286 78.3
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 6.6e-123 444.9 312 71.5
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 5.2e-120 435.3 304 73.0
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 1.2e-119 434.1 292 75.0
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 1.5e-119 433.7 362 63.8
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 1.3e-118 430.6 250 84.0
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 2.0e-116 423.3 248 82.3
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 2.0e-116 423.3 312 68.3
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 5.0e-115 418.7 252 80.2
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 3.3e-114 416.0 405 56.8
Zm00001eb004240 Zea mays HOM05D006329 ORTHO05D008357 9.5e-114 414.5 343 63.0
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 2.8e-113 412.9 328 67.4
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 2.8e-113 412.9 323 66.9
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 3.6e-113 412.5 321 65.1
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 9.8e-111 404.4 334 64.7
HPP92_027741 Vanilla planifolia HOM05D006329 ORTHO05D008357 2.3e-107 393.3 305 68.5
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 3.6e-105 386.0 293 69.6
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 6.2e-105 385.2 309 66.7
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 1.2e-103 380.9 310 66.5
Dinv31231 Davidia involucrata HOM05D006329 ORTHO05D008357 9.2e-101 371.3 247 75.7
Os03g0152700 Oryza sativa ssp. japonica HOM05D006329 ORTHO05D008357 3.6e-97 359.4 304 62.2
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 1.4e-93 347.4 210 78.6
Mapoly0002s0007 Marchantia polymorpha HOM05D006329 ORTHO05D008357 4.3e-90 335.9 267 60.3
Pp3c7_13640 Physcomitrium patens HOM05D006329 ORTHO05D008357 8.9e-88 328.2 296 56.4
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 4.9e-86 322.4 295 60.3
Cfa001678 Carpinus fangiana HOM05D006329 ORTHO05D008357 1.4e-85 320.9 226 71.7
SMO329G0071 Selaginella moellendorffii HOM05D006329 ORTHO05D008357 1.3e-83 314.3 251 61.0
Sc09g0006060 Simmondsia chinensis HOM05D006329 ORTHO05D008357 4.9e-78 295.8 233 65.7
FAN01G2166 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.1e-72 278.1 187 77.5
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.2e-60 238.0 262 54.6
MCO14G528 Micromonas commoda HOM05D006329 ORTHO05D008357 5.0e-54 216.1 257 45.9
CBR_g29624 Chara braunii HOM05D006329 ORTHO05D008357 1.6e-52 211.1 162 63.0
Cre02.g095121 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 2.4e-48 197.2 326 38.7
PRCOL_00004574 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 1.2e-47 194.9 253 43.5
AUR62014125 Chenopodium quinoa HOM05D006329 ORTHO05D008357 2.6e-47 193.7 151 69.5
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 2.4e-32 144.1 83 79.5
Hma1.2p1_2894F.1_g329970 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.6e-31 141.4 82 78.0
Pp3s196_90 Physcomitrium patens HOM05D006329 ORTHO05D008357 1.4e-24 118.2 244 29.9
AT3G43340 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 3.1e-24 117.1 74 74.3
Hma1.2p1_2894F.1_g329973 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 8.8e-19 99.0 57 77.2
MCO04G216 Micromonas commoda HOM05D006329 ORTHO05D008357 1.7e-17 94.7 262 29.4
Cre07.g323550 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 5.4e-16 89.7 255 27.8
Potri.010G226901 Populus trichocarpa HOM05D006329 ORTHO05D028485 8.0e-12 75.9 51 74.5
Glyma.20G182966 Glycine max HOM05D006329 ORTHO05D028485 1.0e-11 75.5 51 64.7
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 1.8e-11 74.7 53 64.2
MCO01G641 Micromonas commoda HOM05D006329 ORTHO05D008357 2.3e-11 74.3 237 28.3
Lalb_Chr21g0313531 Lupinus albus HOM05D006329 ORTHO05D008357 1.7e-09 68.2 103 41.7


User provided reference genes

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