Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.0e-264 916.4 539 100.0
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.5e-242 842.8 539 92.0
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.8e-241 838.6 541 91.5
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 8.6e-211 737.3 463 97.6
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.1e-192 677.2 537 73.7
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.9e-189 666.4 542 73.2
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 4.3e-186 655.2 554 74.0
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.6e-180 635.2 541 72.1
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.1e-178 630.6 539 69.0
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 5.6e-178 628.2 541 71.0
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.6e-177 626.7 536 76.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.8e-177 625.9 543 69.4
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 8.2e-177 624.4 541 68.8
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.4e-176 623.6 541 73.0
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.3e-174 617.1 539 74.0
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.7e-174 616.7 542 67.3
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.2e-174 616.3 541 68.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 6.5e-174 614.8 544 69.5
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.5e-173 612.8 539 67.7
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 5.5e-173 611.7 553 70.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 7.1e-173 611.3 541 69.3
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.7e-172 609.4 542 66.4
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.5e-172 609.0 540 69.1
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 6.0e-172 608.2 540 72.4
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.0e-171 607.4 541 67.7
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 5.7e-170 601.7 541 67.8
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 9.7e-170 600.9 549 65.4
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.2e-169 599.7 542 72.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.7e-166 590.1 539 66.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.7e-166 590.1 542 68.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.9e-166 589.3 536 67.7
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.1e-165 587.4 540 66.5
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.6e-164 582.0 599 63.1
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.6e-164 582.0 599 63.1
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 2.3e-163 579.7 544 65.8
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.2e-161 573.2 545 64.0
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.8e-160 570.1 542 70.5
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 5.3e-160 568.5 540 64.1
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.7e-159 564.7 528 65.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.8e-158 562.4 542 64.0
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.8e-158 562.4 540 69.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 4.2e-157 558.9 540 64.3
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.2e-157 558.9 555 67.0
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 7.2e-157 558.1 544 68.4
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 9.4e-157 557.8 545 65.9
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 9.4e-157 557.8 564 64.2
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-156 556.6 553 66.2
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 7.9e-156 554.7 550 66.0
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.8e-155 553.5 555 65.6
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.8e-155 553.5 553 64.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.1e-154 550.8 555 65.9
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 7.4e-154 548.1 543 66.3
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 5.3e-152 542.0 541 62.7
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.5e-151 540.4 555 65.2
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 7.7e-151 538.1 582 61.3
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 7.7e-151 538.1 542 62.9
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.7e-150 537.0 541 68.0
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-150 536.6 553 63.7
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.9e-149 533.5 543 63.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 4.2e-149 532.3 546 65.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 7.2e-149 531.6 542 62.2
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.6e-148 530.4 542 65.7
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 6.1e-148 528.5 502 65.9
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 8.0e-148 528.1 572 56.6
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 8.0e-148 528.1 494 65.4
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.9e-147 525.8 580 61.7
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.9e-147 525.8 502 66.1
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 6.7e-147 525.0 550 58.9
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.1e-146 524.2 552 59.2
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.6e-146 523.1 572 57.7
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 5.7e-146 521.9 528 66.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.7e-146 521.2 584 59.9
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.3e-145 520.8 527 62.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-145 520.8 538 58.7
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 4.1e-144 515.8 514 67.7
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.0e-143 513.5 551 56.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.6e-143 513.1 564 63.1
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 2.6e-143 513.1 559 61.0
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 5.9e-143 511.9 538 63.6
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 8.5e-142 508.1 550 64.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.5e-141 507.3 543 61.7
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 4.2e-141 505.8 545 63.7
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-140 503.8 544 61.9
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.8e-139 500.4 559 64.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 2.3e-139 500.0 533 58.3
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 4.0e-139 499.2 549 63.2
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 2.6e-138 496.5 513 63.2
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 9.7e-138 494.6 576 54.0
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.3e-137 494.2 509 65.8
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.1e-136 489.2 545 65.7
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-135 487.6 577 58.4
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.2e-135 487.6 550 56.5
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.7e-134 483.8 541 63.6
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.2e-134 483.4 359 72.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 3.8e-134 482.6 523 64.1
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 4.7e-132 475.7 547 61.2
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.8e-131 473.8 549 61.0
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.8e-131 473.8 549 61.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.2e-130 471.1 544 62.5
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 7.5e-130 468.4 550 60.7
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 9.8e-130 468.0 552 60.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.7e-129 467.2 485 63.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 9.1e-128 461.5 551 61.2
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 5.9e-127 458.8 539 57.5
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 5.9e-127 458.8 544 58.6
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 7.2e-125 451.8 547 60.9
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.0e-123 448.0 323 76.5
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.5e-122 444.1 542 60.1
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-121 441.0 519 57.8
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 8.3e-121 438.3 550 55.1
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 7.8e-119 431.8 566 52.3
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 5.0e-118 429.1 544 50.0
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 6.1e-116 422.2 496 60.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.0e-115 421.4 468 62.0
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 4.0e-115 419.5 489 59.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.6e-114 416.8 554 51.4
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.4e-114 416.0 573 52.4
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 8.3e-113 411.8 538 52.8
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 4.4e-106 389.4 536 51.1
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 4.4e-106 389.4 536 51.1
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.0e-102 376.7 323 62.8
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 3.3e-101 373.2 413 67.1
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 5.6e-101 372.5 547 46.3
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.3e-99 367.1 571 45.5
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 6.8e-99 365.5 579 43.5
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.2e-98 364.8 539 46.4
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.5e-98 364.4 547 46.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.2e-96 356.7 554 47.3
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 4.1e-96 356.3 516 54.5
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.0e-95 352.4 547 45.5
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-94 351.3 557 45.8
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.9e-94 349.7 551 44.8
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.6e-94 348.6 547 45.3
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.7e-92 342.8 556 44.4
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.9e-88 330.9 441 57.8
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 5.4e-88 329.3 426 53.1
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 1.2e-87 328.2 195 79.5
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.6e-87 327.8 363 65.6
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 2.1e-76 290.8 319 65.5
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 8.1e-76 288.9 356 46.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.6e-68 264.6 362 59.9
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.9e-67 259.2 333 51.7
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.0e-65 255.4 312 55.4
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 7.9e-63 245.7 364 57.7
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.8e-52 209.9 507 36.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-49 201.8 258 53.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.4e-43 181.0 348 44.3
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.8e-36 157.5 101 69.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-34 151.0 247 40.5
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.5e-32 145.2 183 56.8
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.6e-26 124.4 178 57.3
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.2e-25 121.3 268 38.1
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.8e-22 111.7 140 42.9
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-21 107.5 209 44.5
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.3e-20 103.2 207 41.5
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.1e-19 100.5 201 45.8
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.0e-19 99.8 99 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.2e-18 99.0 239 38.1
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-18 98.6 173 46.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.2e-17 94.7 56 82.1
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.9e-17 94.4 88 70.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 6.5e-17 93.2 69 72.5
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.5e-17 93.2 69 72.5
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 5.5e-16 90.1 51 76.5
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 9.4e-16 89.4 54 68.5
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 8.0e-15 86.3 130 46.9
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.8e-14 82.8 208 40.9
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.2e-13 82.4 108 52.8
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.4e-13 80.9 110 53.6
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 3.7e-12 77.4 59 62.7
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.1e-11 74.3 98 53.1
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.6e-10 72.0 69 55.1
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.0e-10 71.6 73 60.3
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.3e-09 68.9 66 53.0
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 6.6e-09 66.6 87 54.0
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 9.5e-08 62.8 51 56.9
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 9.5e-08 62.8 122 31.1
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 4.7e-07 60.5 174 34.5
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 2.3e-06 58.2 116 36.2


User provided reference genes

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