Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 8.1e-233 810.1 416 100.0
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 9.8e-138 494.2 305 76.4
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.7e-137 493.4 318 73.3
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.7e-137 493.4 313 76.7
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 3.2e-136 489.2 305 75.1
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 7.0e-136 488.0 305 74.8
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 7.0e-136 488.0 318 71.7
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 9.2e-136 487.6 305 74.4
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.6e-135 486.9 305 74.4
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.6e-135 486.9 305 74.4
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 2.0e-135 486.5 319 72.1
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 2.0e-135 486.5 305 74.4
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 2.7e-135 486.1 322 71.1
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 3.5e-135 485.7 323 71.2
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 4.6e-135 485.3 310 73.5
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 4.6e-135 485.3 305 74.1
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.0e-134 484.2 310 73.2
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.0e-134 484.2 310 73.2
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.3e-134 483.8 311 73.0
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 1.7e-134 483.4 310 72.6
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 3.0e-134 482.6 310 72.9
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 3.0e-134 482.6 310 73.5
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.0e-134 482.6 315 73.7
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.9e-134 482.3 306 73.5
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 3.9e-134 482.3 305 73.8
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 3.9e-134 482.3 304 75.0
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 3.9e-134 482.3 310 73.2
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 5.0e-134 481.9 303 73.9
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 8.6e-134 481.1 310 73.2
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 8.6e-134 481.1 328 71.3
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 8.6e-134 481.1 305 74.1
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.1e-133 480.7 306 73.5
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.9e-133 479.9 309 73.5
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 2.5e-133 479.6 309 73.1
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 3.3e-133 479.2 306 73.2
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 4.3e-133 478.8 306 73.2
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 7.3e-133 478.0 310 72.9
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 9.5e-133 477.6 301 75.4
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 9.5e-133 477.6 306 74.5
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 9.5e-133 477.6 310 71.9
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 9.5e-133 477.6 305 73.4
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 9.5e-133 477.6 306 73.5
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.2e-132 477.2 310 72.3
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 1.6e-132 476.9 304 74.0
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 2.8e-132 476.1 336 69.0
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 3.6e-132 475.7 308 72.4
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 4.7e-132 475.3 313 71.9
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.1e-131 474.2 310 71.6
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 8.9e-131 471.1 305 73.8
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 4.4e-130 468.8 306 72.9
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.3e-129 467.2 310 72.3
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.3e-129 467.2 305 71.8
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 1.3e-129 467.2 305 72.5
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 2.2e-129 466.5 318 69.5
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.2e-129 466.5 304 71.1
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.2e-129 466.5 304 71.1
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 2.9e-129 466.1 310 71.6
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 8.3e-129 464.5 310 70.3
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 1.4e-128 463.8 312 69.9
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 3.2e-128 462.6 328 67.4
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 7.1e-128 461.5 310 71.6
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.1e-127 459.9 299 71.6
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 6.0e-127 458.4 311 69.5
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 6.0e-127 458.4 305 70.8
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 2.3e-126 456.4 303 71.9
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 8.6e-126 454.5 358 63.4
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.1e-125 454.1 338 66.0
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 1.9e-125 453.4 340 65.0
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.5e-125 453.0 318 68.2
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 7.3e-125 451.4 364 61.8
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 9.5e-125 451.1 312 67.9
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.1e-124 449.9 318 67.9
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 3.1e-123 446.0 340 64.7
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 6.8e-123 444.9 305 69.2
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-122 444.1 306 68.6
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 2.6e-122 443.0 306 68.6
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 2.6e-122 443.0 310 68.4
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 3.8e-121 439.1 324 67.3
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 8.4e-121 438.0 288 71.9
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 4.6e-119 432.2 305 68.9
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.7e-118 430.3 319 67.1
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 2.3e-118 429.9 364 60.7
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 3.9e-118 429.1 296 70.3
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 3.3e-117 426.0 306 68.0
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 1.2e-114 417.5 315 61.9
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.5e-114 417.2 314 65.3
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 2.6e-114 416.4 331 63.1
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 1.9e-112 410.2 265 74.7
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 1.0e-110 404.4 314 64.6
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.0e-110 404.4 391 54.7
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 9.6e-109 397.9 281 69.0
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 2.6e-106 389.8 343 57.1
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 4.5e-106 389.0 310 62.3
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 5.8e-106 388.7 308 64.0
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.9e-104 383.6 305 61.6
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 5.4e-104 382.1 312 60.3
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 9.6e-101 371.3 306 61.4
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 3.1e-99 366.3 279 64.5
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.5e-98 364.0 318 58.8
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 4.5e-98 362.5 410 48.5
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 7.6e-98 361.7 307 60.3
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 6.0e-95 352.1 312 57.4
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 6.7e-94 348.6 207 77.8
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 6.7e-94 348.6 207 77.8
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 1.9e-93 347.1 205 78.0
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 4.3e-93 345.9 205 77.1
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.8e-92 343.2 227 74.4
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.4e-91 340.9 304 56.6
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.8e-91 340.5 213 74.2
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.5e-90 337.4 206 75.2
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 4.6e-87 325.9 211 71.6
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.3e-86 323.6 292 56.5
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.5e-85 320.9 204 73.5
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.7e-79 300.1 329 50.2
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 7.9e-79 298.5 206 69.9
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.6e-74 283.5 258 57.8
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 8.8e-62 241.9 209 58.4
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 2.0e-50 204.1 197 55.3
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 6.5e-41 172.6 195 48.2
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 4.2e-40 169.9 198 48.0
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 1.4e-38 164.9 128 63.3
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.5e-34 150.2 105 68.6
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 4.7e-31 139.8 83 75.9
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 1.8e-27 127.9 95 64.2
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.3e-25 121.7 99 59.6
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 5.0e-25 119.8 91 63.7
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.5e-24 118.2 70 80.0
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.4e-21 106.7 96 57.3
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 9.2e-19 99.0 74 63.5
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.7e-18 97.4 91 54.9
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.5e-16 91.7 74 56.8
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 3.6e-15 87.0 66 59.1
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.7e-12 78.2 54 63.0
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.1e-11 75.5 59 59.3
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 6.0e-10 69.7 47 61.7
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 3.9e-09 67.0 52 57.7
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.9e-08 64.7 35 68.6
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 9.5e-08 62.4 71 50.7


User provided reference genes

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