Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc91.56 Carica papaya HOM05D002048 ORTHO05D002146 1.6e-132 476.1 240 100.0
Thecc.02G119900 Theobroma cacao HOM05D002048 ORTHO05D002146 3.8e-49 199.1 218 54.1
TWI59G0753 Tripterygium wilfordii HOM05D002048 ORTHO05D002146 4.2e-48 195.7 229 52.4
Duzib132G0903 Durio zibethinus HOM05D002048 ORTHO05D002146 8.7e-46 188.0 217 52.1
Sabra16G0181400 Salix brachista HOM05D002048 ORTHO05D002146 3.3e-45 186.0 220 50.9
Ciclev10027732m.g Citrus clementina HOM05D002048 ORTHO05D002146 2.1e-44 183.3 231 49.4
Manes.10G086900 Manihot esculenta HOM05D002048 ORTHO05D002146 3.1e-43 179.5 219 49.8
Gohir.D04G159700 Gossypium hirsutum HOM05D002048 ORTHO05D002146 5.3e-43 178.7 218 50.9
Gorai.012G147100 Gossypium raimondii HOM05D002048 ORTHO05D002146 5.3e-43 178.7 218 50.9
Haze_10301 Corylus avellana HOM05D002048 ORTHO05D002146 3.8e-41 172.6 218 49.1
Gohir.A04G118000 Gossypium hirsutum HOM05D002048 ORTHO05D002146 3.2e-40 169.5 218 49.5
Ciclev10027741m.g Citrus clementina HOM05D002048 ORTHO05D002146 5.5e-40 168.7 214 48.6
Cfa004700 Carpinus fangiana HOM05D002048 ORTHO05D002146 7.1e-40 168.3 218 48.2
Atru.chr5.2293 Acer truncatum HOM05D002048 ORTHO05D002146 9.3e-40 167.9 241 46.1
Potri.001G289800 Populus trichocarpa HOM05D002048 ORTHO05D002146 9.3e-40 167.9 220 46.4
Nn6g34523 Nelumbo nucifera HOM05D002048 ORTHO05D002146 7.4e-37 158.3 217 47.9
FvH4_2g03330 Fragaria vesca HOM05D002048 ORTHO05D002146 3.7e-36 156.0 218 47.7
FAN24G2311 Fragaria x ananassa HOM05D002048 ORTHO05D002146 1.1e-35 154.5 218 47.7
FAN20G2095 Fragaria x ananassa HOM05D002048 ORTHO05D002146 1.8e-35 153.7 218 47.2
Dinv09538 Davidia involucrata HOM05D002048 ORTHO05D002146 2.4e-35 153.3 218 48.2
FAN15G2976 Fragaria x ananassa HOM05D002048 ORTHO05D002146 9.0e-35 151.4 217 46.5
Lj9A337T46 Lonicera japonica HOM05D002048 ORTHO05D002146 1.5e-34 150.6 219 46.6
FAN27G2083 Fragaria x ananassa HOM05D002048 ORTHO05D002146 1.3e-33 147.5 218 46.3
Prupe.8G150300 Prunus persica HOM05D002048 ORTHO05D002146 4.2e-32 142.5 218 45.4
Sabra09G0065600 Salix brachista HOM05D002048 ORTHO05D002146 2.1e-31 140.2 222 43.7
TAR381G0254 Trochodendron aralioides HOM05D002048 ORTHO05D002146 1.0e-30 137.9 220 43.2
MD05G1105600 Malus domestica HOM05D002048 ORTHO05D002146 1.3e-30 137.5 227 43.2
RcHm_v2.0_Chr6g0248471 Rosa chinensis HOM05D002048 ORTHO05D002146 6.7e-30 135.2 219 44.3
CiPaw.05G020700 Carya illinoinensis HOM05D002048 ORTHO05D002146 8.7e-30 134.8 219 45.2
Potri.009G085400 Populus trichocarpa HOM05D002048 ORTHO05D002146 1.6e-28 130.6 183 44.8
Nn5g30660 Nelumbo nucifera HOM05D002048 ORTHO05D002146 6.9e-27 125.2 217 42.4
Lalb_Chr06g0164981 Lupinus albus HOM05D002048 ORTHO05D002146 4.5e-26 122.5 219 41.6
ATR0564G474 Amborella trichopoda HOM05D002048 ORTHO05D002146 7.6e-26 121.7 221 39.8
Lalb_Chr02g0144901 Lupinus albus HOM05D002048 ORTHO05D002146 2.2e-25 120.2 221 41.2
Lj5g0012181 Lotus japonicus HOM05D002048 ORTHO05D002146 8.5e-25 118.2 227 40.1
PSO017G4256 Papaver somniferum HOM05D002048 ORTHO05D002146 1.4e-24 117.5 215 39.1
TAR625G1475 Trochodendron aralioides HOM05D002048 ORTHO05D002146 2.5e-24 116.7 217 40.6
Actinidia02440 Actinidia chinensis HOM05D002048 ORTHO05D002146 1.6e-23 114.0 224 40.6
CANSAT56G3433 Cannabis sativa HOM05D002048 ORTHO05D002146 1.6e-23 114.0 225 40.4
Sed0000428 Sechium edule HOM05D002048 ORTHO05D002146 2.1e-23 113.6 219 42.5
PSO170G6386 Papaver somniferum HOM05D002048 ORTHO05D002146 7.9e-23 111.7 215 38.1
Phvul.007G047100 Phaseolus vulgaris HOM05D002048 ORTHO05D002146 7.9e-23 111.7 224 35.7
Duzib116G0418 Durio zibethinus HOM05D002048 ORTHO05D002146 1.0e-22 111.3 218 39.0
CSS0035447 Camellia sinensis var. sinensis HOM05D002048 ORTHO05D002146 1.3e-22 110.9 222 39.2
Prupe.1G419400 Prunus persica HOM05D002048 ORTHO05D002146 1.8e-22 110.5 217 39.2
Haze_22392 Corylus avellana HOM05D002048 ORTHO05D002146 6.7e-22 108.6 218 38.5
Glyma.10G255700 Glycine max HOM05D002048 ORTHO05D002146 6.7e-22 108.6 226 39.8
QL12p038612 Quercus lobata HOM05D002048 ORTHO05D002146 1.1e-21 107.8 222 39.2
CsaV3_4G000090 Cucumis sativus L. HOM05D002048 ORTHO05D002146 1.5e-21 107.5 222 41.0
Glyma.20G135800 Glycine max HOM05D002048 ORTHO05D002146 1.9e-21 107.1 224 38.4
Haze_22400 Corylus avellana HOM05D002048 ORTHO05D002146 2.5e-21 106.7 218 38.1
Thhalv10019995m.g Eutrema salsugineum HOM05D002048 ORTHO05D002146 2.5e-21 106.7 225 40.9
VMungo0720G0973 Vigna mungo HOM05D002048 ORTHO05D002146 5.7e-21 105.5 226 36.7
Thecc.08G084800 Theobroma cacao HOM05D002048 ORTHO05D002146 9.7e-21 104.8 221 38.0
Aa31LG8G6450 Aethionema arabicum HOM05D002048 ORTHO05D002146 1.3e-20 104.4 219 38.8
CDE02G0652 Ceratophyllum demersum HOM05D002048 ORTHO05D002146 1.3e-20 104.4 212 38.2
arahy.Tifrunner.gnm1.ann1.SU0RK2 Arachis hypogaea HOM05D002048 ORTHO05D002146 2.2e-20 103.6 223 35.9
Hma1.2p1_0661F.1_g198110 Hydrangea macrophylla HOM05D002048 ORTHO05D002146 3.7e-20 102.8 209 42.1
Gohir.D06G022600 Gossypium hirsutum HOM05D002048 ORTHO05D002146 4.8e-20 102.4 220 38.2
Gorai.010G027200 Gossypium raimondii HOM05D002048 ORTHO05D002146 4.8e-20 102.4 220 38.2
COL.COLO4_32485 Corchorus olitorius HOM05D002048 ORTHO05D002146 6.3e-20 102.1 212 39.2
Sc18g0007360 Simmondsia chinensis HOM05D002048 ORTHO05D002146 6.3e-20 102.1 218 37.2
MELO3C018022.2 Cucumis melo HOM05D002048 ORTHO05D002146 5.3e-19 99.0 221 39.4
CSS0050419 Camellia sinensis var. sinensis HOM05D002048 ORTHO05D002146 6.9e-19 98.6 214 38.3
ClCG10G010050 Citrullus lanatus HOM05D002048 ORTHO05D002146 9.1e-19 98.2 220 38.6
CsaV3_4G035260 Cucumis sativus L. HOM05D002048 ORTHO05D002146 2.6e-18 96.7 206 36.9
Psat6g213120 Pisum sativum HOM05D002048 ORTHO05D002146 2.6e-18 96.7 219 35.2
Potri.014G013100 Populus trichocarpa HOM05D002048 ORTHO05D002146 4.5e-18 95.9 207 37.7
ClCG05G026560 Citrullus lanatus HOM05D002048 ORTHO05D002146 5.9e-18 95.5 206 36.9
COL.COLO4_28463 Corchorus olitorius HOM05D002048 ORTHO05D002146 5.9e-18 95.5 179 38.0
AUR62027023 Chenopodium quinoa HOM05D002048 ORTHO05D002146 1.7e-17 94.0 220 34.1
MELO3C016837.2 Cucumis melo HOM05D002048 ORTHO05D002146 2.9e-17 93.2 206 36.4
Medtr1g106025 Medicago truncatula HOM05D002048 ORTHO05D002146 2.9e-17 93.2 225 34.7
AUR62030865 Chenopodium quinoa HOM05D002048 ORTHO05D002146 5.0e-17 92.4 213 35.2
arahy.Tifrunner.gnm1.ann1.R5JV3U Arachis hypogaea HOM05D002048 ORTHO05D002146 6.5e-17 92.0 219 33.3
Eucgr.G01189 Eucalyptus grandis HOM05D002048 ORTHO05D002146 6.5e-17 92.0 225 36.9
MD08G1078500 Malus domestica HOM05D002048 ORTHO05D002146 8.5e-17 91.7 224 35.3
TWI56G0554 Tripterygium wilfordii HOM05D002048 ORTHO05D002146 1.4e-16 90.9 211 35.5
BraA05t21837Z Brassica rapa HOM05D002048 ORTHO05D002146 1.9e-16 90.5 219 37.0
A05p29900 Brassica napus HOM05D002048 ORTHO05D002146 3.2e-16 89.7 219 36.5
THA.LOC104826497 Tarenaya hassleriana HOM05D002048 ORTHO05D002146 5.5e-16 89.0 212 34.4
Carub.0003s1955 Capsella rubella HOM05D002048 ORTHO05D002146 7.2e-16 88.6 216 36.1
Aa31LG7G10080 Aethionema arabicum HOM05D002048 ORTHO05D002146 9.4e-16 88.2 221 37.1
arahy.Tifrunner.gnm1.ann1.S90AI0 Arachis hypogaea HOM05D002048 ORTHO05D002146 9.4e-16 88.2 209 38.3
Sc26g0004230 Simmondsia chinensis HOM05D002048 ORTHO05D002146 9.4e-16 88.2 218 33.5
vmacro01946 Vaccinium macrocarpon HOM05D002048 ORTHO05D002146 1.2e-15 87.8 207 37.7
BcaB06g26037 Brassica carinata HOM05D002048 ORTHO05D002146 1.6e-15 87.4 220 36.8
Sp3g17700 Schrenkiella parvula HOM05D002048 ORTHO05D002146 2.1e-15 87.0 219 36.1
THA.LOC104807020 Tarenaya hassleriana HOM05D002048 ORTHO05D002146 2.1e-15 87.0 221 37.1
Nitab4.5_0005762g0010 Nicotiana tabacum HOM05D002048 ORTHO05D002146 3.6e-15 86.3 222 36.0
Peaxi162Scf00152g00645 Petunia axillaris HOM05D002048 ORTHO05D002146 4.7e-15 85.9 216 35.6
Lj5g0025981 Lotus japonicus HOM05D002048 ORTHO05D002146 6.1e-15 85.5 210 39.5
Aqoxy1G00259 Aquilegia oxysepala HOM05D002048 ORTHO05D002146 1.0e-14 84.7 216 34.7
AL3G33120 Arabidopsis lyrata HOM05D002048 ORTHO05D002146 1.0e-14 84.7 224 36.2
AT1G44910 Arabidopsis thaliana HOM05D002048 ORTHO05D002146 1.0e-14 84.7 228 36.0
ECA246G1033 Erigeron canadensis HOM05D002048 ORTHO05D002146 1.8e-14 84.0 223 34.5
SEGI_18842 Sequoiadendron giganteum HOM05D002048 ORTHO05D002146 1.8e-14 84.0 221 35.7
Sopen11g019850 Solanum pennellii HOM05D002048 ORTHO05D002146 1.8e-14 84.0 220 35.0
HPP92_012932 Vanilla planifolia HOM05D002048 ORTHO05D002146 1.8e-14 84.0 219 33.3
arahy.Tifrunner.gnm1.ann1.ZAPI4Q Arachis hypogaea HOM05D002048 ORTHO05D002146 2.3e-14 83.6 207 37.7
BolC5t33242H Brassica oleracea HOM05D002048 ORTHO05D002146 2.3e-14 83.6 216 35.6
BcaC05g28436 Brassica carinata HOM05D002048 ORTHO05D002146 3.0e-14 83.2 216 35.6
Solyc11g044340.3 Solanum lycopersicum HOM05D002048 ORTHO05D002146 3.0e-14 83.2 220 35.0
AT3G19670 Arabidopsis thaliana HOM05D002048 ORTHO05D002146 6.7e-14 82.0 224 34.8
Glyma.14G089078 Glycine max HOM05D002048 ORTHO05D002146 6.7e-14 82.0 212 37.7
HanXRQChr13g0402331 Helianthus annuus HOM05D002048 ORTHO05D002146 6.7e-14 82.0 231 32.9
GSVIVG01009302001 Vitis vinifera HOM05D002048 ORTHO05D002146 6.7e-14 82.0 217 34.6
C05p45140 Brassica napus HOM05D002048 ORTHO05D002146 8.8e-14 81.6 216 35.6
Cc02_g20050 Coffea canephora HOM05D002048 ORTHO05D002146 8.8e-14 81.6 217 33.6
CDE02G1107 Ceratophyllum demersum HOM05D002048 ORTHO05D002146 1.1e-13 81.3 211 35.5
Cfa013740 Carpinus fangiana HOM05D002048 ORTHO05D002146 1.5e-13 80.9 169 36.7
FvH4_2g32680 Fragaria vesca HOM05D002048 ORTHO05D002146 2.0e-13 80.5 213 34.7
FAN15G3319 Fragaria x ananassa HOM05D002048 ORTHO05D002146 2.0e-13 80.5 214 33.6
FAN24G0734 Fragaria x ananassa HOM05D002048 ORTHO05D002146 2.0e-13 80.5 213 34.7
FAN27G3457 Fragaria x ananassa HOM05D002048 ORTHO05D002146 2.0e-13 80.5 214 33.6
AUR62022344 Chenopodium quinoa HOM05D002048 ORTHO05D002146 2.6e-13 80.1 220 34.1
CiPaw.08G052200 Carya illinoinensis HOM05D002048 ORTHO05D002146 3.3e-13 79.7 138 39.9
Lalb_Chr22g0355781 Lupinus albus HOM05D002048 ORTHO05D002146 7.4e-13 78.6 205 38.0
Oeu047227.1 Olea europaea HOM05D002048 ORTHO05D002146 7.4e-13 78.6 219 38.4
CARHR095130 Cardamine hirsuta HOM05D002048 ORTHO05D002146 9.7e-13 78.2 222 36.9
AL1G52580 Arabidopsis lyrata HOM05D002048 ORTHO05D002146 1.3e-12 77.8 228 34.6
Ca_06979_v3 Cicer arietinum L. HOM05D002048 ORTHO05D002146 1.3e-12 77.8 204 35.3
Medtr1g017520 Medicago truncatula HOM05D002048 ORTHO05D002146 1.3e-12 77.8 208 36.1
Phvul.001G029800 Phaseolus vulgaris HOM05D002048 ORTHO05D002146 1.3e-12 77.8 210 35.7
Aqoxy6G02485 Aquilegia oxysepala HOM05D002048 ORTHO05D002146 1.7e-12 77.4 219 34.7
EL10Ac9g22179 Beta vulgaris HOM05D002048 ORTHO05D002146 1.7e-12 77.4 166 35.5
Manes.18G049300 Manihot esculenta HOM05D002048 ORTHO05D002146 2.2e-12 77.0 210 33.3
TPR.G21140 Trifolium pratense HOM05D002048 ORTHO05D002146 2.8e-12 76.6 226 32.3
SalBow6G6764 Salvia bowleyana HOM05D002048 ORTHO05D002146 3.7e-12 76.3 207 34.8
Sp1g33780 Schrenkiella parvula HOM05D002048 ORTHO05D002146 4.8e-12 75.9 218 35.3
Sopen07g011950 Solanum pennellii HOM05D002048 ORTHO05D002146 4.8e-12 75.9 227 34.8
vmacro21418 Vaccinium macrocarpon HOM05D002048 ORTHO05D002146 4.8e-12 75.9 216 32.4
Carub.0001s3541 Capsella rubella HOM05D002048 ORTHO05D002146 8.2e-12 75.1 220 35.0
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 8.2e-12 75.1 218 33.5
Actinidia19296 Actinidia chinensis HOM05D002048 ORTHO05D002146 1.1e-11 74.7 200 32.5
FAN20G2176 Fragaria x ananassa HOM05D002048 ORTHO05D002146 1.1e-11 74.7 214 33.6
Thhalv10011212m.g Eutrema salsugineum HOM05D002048 ORTHO05D002146 1.4e-11 74.3 218 35.3
EL10Ac1g01692 Beta vulgaris HOM05D002048 ORTHO05D002146 1.8e-11 73.9 217 33.2
VMungo0647G0326 Vigna mungo HOM05D002048 ORTHO05D002146 3.1e-11 73.2 210 33.8
CAN.G575.100 Capsicum annuum HOM05D002048 ORTHO05D002146 4.1e-11 72.8 218 33.9
Gohir.A06G025500 Gossypium hirsutum HOM05D002048 ORTHO05D002146 5.3e-11 72.4 219 33.3
Peaxi162Scf00453g00029 Petunia axillaris HOM05D002048 ORTHO05D002146 1.2e-10 71.2 216 32.4
arahy.Tifrunner.gnm1.ann1.QJHX3I Arachis hypogaea HOM05D002048 ORTHO05D002146 1.5e-10 70.9 218 34.9
Sed0026244 Sechium edule HOM05D002048 ORTHO05D002146 1.5e-10 70.9 206 35.4
Psat6g017320 Pisum sativum HOM05D002048 ORTHO05D002146 2.6e-10 70.1 207 35.7
DCAR_020063 Daucus carota HOM05D002048 ORTHO05D002146 4.5e-10 69.3 220 32.3
HPP92_002487 Vanilla planifolia HOM05D002048 ORTHO05D002146 7.7e-10 68.6 128 34.4
Sabra14G0007900 Salix brachista HOM05D002048 ORTHO05D002146 1.0e-09 68.2 210 33.8
Glyma.17G233000 Glycine max HOM05D002048 ORTHO05D002146 1.7e-09 67.4 214 35.5
Oeu037291.1 Olea europaea HOM05D002048 ORTHO05D002146 1.7e-09 67.4 127 43.3
Atru.chr13.868 Acer truncatum HOM05D002048 ORTHO05D002146 2.2e-09 67.0 213 33.3
PGR042G2127 Punica granatum HOM05D002048 ORTHO05D002146 3.8e-09 66.2 202 34.7
Dinv44932 Davidia involucrata HOM05D002048 ORTHO05D002146 8.5e-09 65.1 217 33.2
CDE04G0186 Ceratophyllum demersum HOM05D002048 ORTHO05D002146 1.4e-08 64.3 210 33.3
Actinidia10220 Actinidia chinensis HOM05D002048 ORTHO05D002146 3.2e-08 63.2 156 34.0
Hund00421 Selenicereus undatus HOM05D002048 ORTHO05D002146 1.6e-07 60.8 217 30.9
CDE01G0825 Ceratophyllum demersum HOM05D002048 ORTHO05D002146 3.6e-07 59.7 210 31.4
CANSAT25G3132 Cannabis sativa HOM05D002048 ORTHO05D002146 4.7e-07 59.3 208 34.1
ECA247G1183 Erigeron canadensis HOM05D002048 ORTHO05D002146 1.0e-06 58.2 214 32.2
BraA10t42967Z Brassica rapa HOM05D002048 ORTHO05D002146 1.4e-06 57.8 212 33.5
BcaB07g33906 Brassica carinata HOM05D002048 ORTHO05D002146 2.3e-06 57.0 225 31.6
A10p07170 Brassica napus HOM05D002048 ORTHO05D002146 6.7e-06 55.5 220 33.2


User provided reference genes

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