Gene: Thecc.08G084800

General Information

Structural Information

Species Theobroma cacao
Gene Identifier Thecc.08G084800
Transcript Identifier Thecc.08G084800.2
Gene Type Coding gene
Location Chromosome_8 : 4175746-4185543 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002048
#Genes/#Species 324/96
Phylogenetic origin

ID ORTHO05D002146
#Genes/#Species 312/96
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Thecc.08G084800.v2.1
pacid 42004512
ancestorIdentifier Thecc1EG034659.CGDv1.1

Descriptions

Short descriptions
Ortholog descriptions

Description Pre-mRNA-processing protein 40A

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045292	IEA	InterPro	mRNA cis splicing, via spliceosome
GO:0008380	ISO	PLAZA Integrative Orthology	RNA splicing	AT1G44910

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0070063	ISO	PLAZA Integrative Orthology	RNA polymerase binding	AT1G44910

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016592	ISO	PLAZA Integrative Orthology	mediator complex	AT1G44910
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT1G44910

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR036517	FF domain superfamily
IPR002713	FF domain
IPR001202	WW domain
IPR039726	Pre-mRNA-processing factor Prp40
IPR036020	WW domain superfamily

Mapman id	Description
16.2.1.1.5.4	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B)