Gene: Potri.009G085400
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.009G085400
- Transcript Identifier Potri.009G085400.9
- Gene Type Coding gene
- Location Chr09 : 8011394-8021703 : positive
Gene Family Information
- ID HOM05D002048
- #Genes/#Species 324/96
- Phylogenetic origin
- ID ORTHO05D002146
- #Genes/#Species 312/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Potri.009G085400.v4.1
- pacid 42771250
- synonym POPTR_0009s08880
Descriptions
- Description K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045292 | IEA | InterPro | mRNA cis splicing, via spliceosome | |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT3G19670 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0070063 | ISO | PLAZA Integrative Orthology | RNA polymerase binding | AT3G19670 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G19670 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.1.1.5.4 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B) |