Gene: Nitab4.5_0005762g0010

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0005762g0010
  • Transcript Identifier Nitab4.5_0005762g0010.1
  • Gene Type Coding gene
  • Location Nitab4.5_0005762 : 43676-70994 : positive

Gene Family Information

  • ID HOM05D002048
  • #Genes/#Species 324/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0005762g0010.1
  • SR1-identifier Nta13g15660.2

Descriptions

  • Description WW domain, FF domain, Pre-mRNA-processing protein PRP40
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT1G44910

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0070063
ISO
PLAZA Integrative OrthologyRNA polymerase binding AT1G44910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016592
ISO
PLAZA Integrative Orthologymediator complex AT1G44910
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G44910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036517 FF domain superfamily
IPR039726 Pre-mRNA-processing factor Prp40
IPR001202 WW domain
IPR002713 FF domain
IPR036020 WW domain superfamily
Mapman id Description
16.2.1.1.5.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B)