Gene: Potri.014G013100

General Information

Structural Information

Species Populus trichocarpa
Gene Identifier Potri.014G013100
Transcript Identifier Potri.014G013100.2
Gene Type Coding gene
Location Chr14 : 750052-763159 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002048
#Genes/#Species 324/96
Phylogenetic origin

ID ORTHO05D002146
#Genes/#Species 312/96
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Potri.014G013100.v4.1
pacid 42764141
synonym POPTR_0014s01350

Descriptions

Short descriptions
Ortholog descriptions

Description PTHR11864//PTHR11864:SF0 - PRE-MRNA-PROCESSING PROTEIN PRP40 // PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045292	IEA	InterPro	mRNA cis splicing, via spliceosome
GO:0008380	ISO	PLAZA Integrative Orthology	RNA splicing	AT1G44910

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0070063	ISO	PLAZA Integrative Orthology	RNA polymerase binding	AT1G44910

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016592	ISO	PLAZA Integrative Orthology	mediator complex	AT1G44910
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT1G44910

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002713	FF domain
IPR036517	FF domain superfamily
IPR001202	WW domain
IPR036020	WW domain superfamily
IPR039726	Pre-mRNA-processing factor Prp40

Mapman id	Description
16.2.1.1.5.4	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B)