Gene: Sopen11g019850
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g019850
- Transcript Identifier Sopen11g019850.3
- Gene Type Coding gene
- Location Spenn-ch11 : 45770235-45790580 : negative
Gene Family Information
- ID HOM05D002048
- #Genes/#Species 324/96
- Phylogenetic origin
- ID ORTHO05D002146
- #Genes/#Species 312/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen11g019850.3
Descriptions
- Description Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. | pre-mRNA-processing protein 40A (PRP40A) | CONTAINS InterPro DOMAIN/s: FF domain , WW/Rsp5/WWP | BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045292 | IEA | InterPro | mRNA cis splicing, via spliceosome | |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT3G19670 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0070063 | ISO | PLAZA Integrative Orthology | RNA polymerase binding | AT3G19670 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G19670 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.1.1.5.4 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B) |