Gene: Thecc.02G119900

General Information

Structural Information

Species Theobroma cacao
Gene Identifier Thecc.02G119900
Transcript Identifier Thecc.02G119900.1
Gene Type Coding gene
Location Chromosome_2 : 6124027-6135529 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D002048
#Genes/#Species 324/96
Phylogenetic origin

ID ORTHO05D002146
#Genes/#Species 312/96
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Thecc.02G119900.v2.1
pacid 42035417
ancestorIdentifier Thecc1EG007259.CGDv1.1
ancestorIdentifier Thecc1EG007259t1.CGDv1.1

Descriptions

Short descriptions
Ortholog descriptions

Description Pre-mRNA-processing protein 40B

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045292	IEA	InterPro	mRNA cis splicing, via spliceosome
GO:0008380	ISO	PLAZA Integrative Orthology	RNA splicing	AT3G19670

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0070063	ISO	PLAZA Integrative Orthology	RNA polymerase binding	AT3G19670

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G19670

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001202	WW domain
IPR036517	FF domain superfamily
IPR039726	Pre-mRNA-processing factor Prp40
IPR036020	WW domain superfamily
IPR002713	FF domain

Mapman id	Description
16.2.1.1.5.4	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B)