Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 1.1e-56 223.0 105 100.0
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 1.2e-36 156.4 79 93.7
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 1.3e-30 136.3 75 84.0
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.8e-30 134.8 75 81.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.5e-30 133.7 75 80.0
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.9e-29 132.5 75 78.7
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.9e-29 132.5 75 78.7
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.9e-29 132.5 75 78.7
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.9e-29 132.5 75 80.0
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 9.4e-29 130.2 75 80.0
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 9.4e-29 130.2 75 81.3
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 1.6e-28 129.4 75 78.7
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.7e-28 128.6 75 76.0
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 2.7e-28 128.6 75 77.3
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 4.7e-28 127.9 75 78.7
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 4.7e-28 127.9 75 80.0
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 6.1e-28 127.5 75 76.0
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 8.0e-28 127.1 74 79.7
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 8.0e-28 127.1 75 78.7
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 8.0e-28 127.1 75 78.7
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.0e-27 126.7 70 81.4
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.0e-27 126.7 75 76.0
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.0e-27 126.7 75 78.7
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.0e-27 126.7 84 75.0
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.4e-27 126.3 75 78.7
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.8e-27 125.9 75 77.3
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 2.3e-27 125.6 70 81.4
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 2.3e-27 125.6 70 81.4
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.3e-27 125.6 75 77.3
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 2.3e-27 125.6 75 77.3
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 2.3e-27 125.6 75 77.3
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 2.3e-27 125.6 75 77.3
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 2.3e-27 125.6 74 78.4
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.3e-27 125.6 84 71.4
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 2.3e-27 125.6 75 76.0
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 3.0e-27 125.2 75 73.3
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.0e-27 125.2 75 74.7
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 3.0e-27 125.2 75 77.3
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 5.2e-27 124.4 75 73.3
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 6.7e-27 124.0 74 77.0
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 8.8e-27 123.6 73 78.1
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.1e-26 123.2 72 75.0
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.5e-26 122.9 75 76.0
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.5e-26 122.9 75 74.7
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.6e-26 122.1 76 77.6
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 2.6e-26 122.1 76 77.6
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.6e-26 122.1 75 74.7
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.6e-26 122.1 84 67.9
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 3.3e-26 121.7 77 74.0
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.3e-26 121.7 68 79.4
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 3.3e-26 121.7 77 74.0
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 4.4e-26 121.3 70 78.6
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 4.4e-26 121.3 78 74.4
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 4.4e-26 121.3 84 67.9
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.7e-26 120.9 69 78.3
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 7.5e-26 120.6 69 78.3
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 7.5e-26 120.6 69 78.3
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.5e-26 120.6 69 78.3
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.3e-25 119.8 71 78.9
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 1.3e-25 119.8 87 71.3
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.3e-25 119.8 69 76.8
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 1.7e-25 119.4 77 74.0
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.7e-25 119.4 69 78.3
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.7e-25 119.4 77 75.3
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.8e-25 118.6 74 70.3
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 3.7e-25 118.2 69 76.8
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 4.8e-25 117.9 69 75.4
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 6.3e-25 117.5 68 75.0
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 1.4e-24 116.3 77 74.0
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.8e-24 115.9 74 71.6
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.4e-24 115.5 77 71.4
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 2.4e-24 115.5 68 73.5
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 3.1e-24 115.2 75 73.3
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 3.1e-24 115.2 75 73.3
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 3.1e-24 115.2 75 73.3
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 3.1e-24 115.2 75 73.3
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 3.1e-24 115.2 69 73.9
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 3.1e-24 115.2 84 69.0
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 3.1e-24 115.2 76 71.1
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 4.1e-24 114.8 70 74.3
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 5.3e-24 114.4 75 72.0
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 5.3e-24 114.4 74 74.3
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 5.3e-24 114.4 59 83.1
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 5.3e-24 114.4 74 70.3
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 5.3e-24 114.4 76 73.7
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 5.3e-24 114.4 78 65.4
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 7.0e-24 114.0 74 70.3
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 7.0e-24 114.0 81 63.0
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 9.1e-24 113.6 77 72.7
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.2e-23 113.2 75 68.0
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.2e-23 113.2 75 72.0
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.2e-23 113.2 75 72.0
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.6e-23 112.8 74 68.9
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.6e-23 112.8 75 69.3
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.6e-23 112.8 77 70.1
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.0e-23 112.5 75 72.0
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.7e-23 112.1 73 67.1
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 3.5e-23 111.7 75 68.0
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 3.5e-23 111.7 74 68.9
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.5e-23 111.3 69 71.0
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 5.9e-23 110.9 77 67.5
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 7.7e-23 110.5 76 68.4
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.3e-22 109.8 78 69.2
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.7e-22 109.4 62 79.0
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.2e-22 109.0 75 68.0
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.9e-22 108.6 68 70.6
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 3.8e-22 108.2 68 72.1
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 3.8e-22 108.2 73 68.5
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 3.8e-22 108.2 58 77.6
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 8.5e-22 107.1 76 65.8
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.9e-21 105.9 84 63.1
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.2e-21 104.8 74 64.9
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 9.4e-21 103.6 75 64.0
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.6e-20 102.8 77 66.2
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.6e-20 102.8 68 66.2
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 3.6e-20 101.7 64 71.9
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 3.6e-20 101.7 71 63.4
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 8.0e-20 100.5 68 66.2
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.0e-19 100.1 75 64.0
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 2.3e-19 99.0 75 61.3
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 6.8e-19 97.4 49 81.6
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 8.8e-19 97.1 63 65.1
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 3.4e-18 95.1 57 70.2
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 3.4e-18 95.1 110 47.3
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 5.7e-18 94.4 56 69.6
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.3e-17 93.2 57 64.9
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.8e-16 89.4 69 56.5
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.1e-16 88.6 76 57.9
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 3.2e-13 78.6 51 70.6
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.6e-12 76.3 72 51.4
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 4.7e-12 74.7 64 51.6
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 1.8e-11 72.8 63 50.8
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 5.7e-10 67.8 59 54.2
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.3e-09 66.6 33 81.8
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.5e-07 58.5 30 80.0
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.0e-06 57.0 75 45.3
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 6.6e-06 54.3 39 66.7
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 8.6e-06 53.9 39 66.7


User provided reference genes

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