Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 1.1e-206 723.0 357 100.0
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 8.0e-189 663.7 356 90.4
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 2.6e-187 658.7 349 91.4
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 3.4e-187 658.3 354 90.1
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 7.5e-187 657.1 354 89.8
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.2e-186 655.6 357 89.4
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.9e-186 655.2 356 88.8
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 1.1e-185 653.3 361 89.8
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 2.4e-185 652.1 358 88.8
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 3.2e-185 651.7 359 88.9
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 9.2e-185 650.2 356 87.6
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.6e-184 649.4 354 89.5
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 1.0e-183 646.7 356 88.5
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.9e-183 644.8 358 87.7
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 6.6e-183 644.0 353 87.8
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 6.6e-183 644.0 357 87.4
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.1e-182 643.3 357 87.4
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.1e-182 643.3 354 87.6
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.1e-182 643.3 354 87.6
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.5e-182 642.1 354 87.3
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 4.3e-182 641.3 358 87.4
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.6e-181 639.4 358 86.9
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 2.1e-181 639.0 349 88.3
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 6.2e-181 637.5 359 86.9
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.8e-180 636.0 355 87.6
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 1.8e-180 636.0 354 87.6
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 4.0e-180 634.8 358 87.2
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 5.2e-180 634.4 357 86.8
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.2e-179 633.3 371 84.4
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.5e-179 632.9 344 88.7
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.5e-179 632.9 358 85.8
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.0e-179 632.5 359 85.5
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 7.5e-179 630.6 356 86.2
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 7.5e-179 630.6 358 85.5
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 1.7e-178 629.4 355 86.5
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.7e-178 629.4 358 84.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.2e-178 629.0 359 85.8
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.9e-178 627.9 355 86.5
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 2.4e-177 625.5 358 84.9
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 1.6e-176 622.9 352 86.4
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 3.5e-176 621.7 410 76.1
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 6.0e-176 620.9 358 85.8
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 7.8e-176 620.5 397 78.3
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 2.5e-174 615.5 360 85.0
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 4.3e-174 614.8 372 81.7
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.6e-173 612.8 333 90.4
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 6.2e-173 610.9 382 79.6
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 5.2e-172 607.8 365 82.2
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 6.8e-172 607.4 382 79.3
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 8.9e-172 607.1 353 82.7
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.0e-171 605.9 354 84.7
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.4e-171 605.1 354 84.5
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 3.7e-170 601.7 353 82.7
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 4.9e-170 601.3 394 77.2
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 4.9e-170 601.3 378 79.9
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 1.9e-169 599.4 349 84.5
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.4e-169 599.0 354 83.1
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 1.6e-168 596.3 335 86.3
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 2.7e-168 595.5 321 88.2
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 7.8e-168 594.0 344 83.1
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.3e-167 593.2 363 80.4
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.3e-167 593.2 351 82.9
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 3.0e-167 592.0 351 80.6
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 3.0e-167 592.0 351 80.6
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.0e-167 592.0 350 82.0
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 8.6e-167 590.5 373 80.4
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 1.5e-166 589.7 357 78.7
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 5.6e-166 587.8 360 80.8
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.6e-165 586.3 356 81.5
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 2.8e-165 585.5 360 80.8
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 1.1e-161 573.5 366 77.9
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 2.4e-161 572.4 351 79.8
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 9.3e-161 570.5 413 70.9
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.2e-160 570.1 370 77.8
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 3.9e-159 565.1 312 87.2
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.9e-158 562.8 357 79.6
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.3e-157 560.1 443 66.1
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.2e-155 553.5 370 75.9
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.6e-155 552.4 326 82.2
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 4.5e-155 551.6 344 79.1
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 2.9e-154 548.9 332 82.8
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 3.0e-151 538.9 359 76.6
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 6.6e-151 537.7 320 82.2
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 3.3e-150 535.4 323 77.4
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 5.6e-150 534.6 336 74.1
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 1.6e-149 533.1 354 77.7
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 5.3e-148 528.1 316 77.2
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 9.3e-145 517.3 367 72.5
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 2.7e-144 515.8 352 74.1
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 2.7e-144 515.8 387 68.0
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 5.1e-143 511.5 357 70.9
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 9.6e-142 507.3 360 73.1
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 3.4e-139 498.8 319 72.1
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.0e-138 497.3 361 72.0
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 2.2e-138 496.1 351 71.5
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 9.6e-134 480.7 310 72.9
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.3e-127 460.3 293 76.5
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 1.1e-126 457.2 277 78.7
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 5.3e-124 448.4 357 65.0
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.1e-120 436.4 238 88.2
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 2.7e-120 436.0 348 65.8
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.0e-119 434.1 350 67.7
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 1.5e-118 430.3 322 62.1
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 4.1e-116 422.2 227 89.9
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 9.1e-116 421.0 324 63.0
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 9.4e-113 411.0 222 88.3
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.4e-111 407.1 237 82.7
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 1.8e-111 406.8 226 85.4
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 1.8e-111 406.8 226 85.4
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 3.0e-111 406.0 230 85.7
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 3.0e-111 406.0 321 66.0
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.0e-110 403.3 351 61.8
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.7e-109 400.2 212 90.1
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 3.2e-105 386.0 225 82.7
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.7e-103 378.3 231 81.4
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 4.7e-96 355.5 264 63.6
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 1.4e-79 300.8 223 68.6
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.5e-70 270.8 209 67.5
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 4.3e-65 252.7 211 63.5
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 5.4e-60 235.7 353 42.5
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 6.6e-58 228.8 269 50.2
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 8.1e-56 221.9 129 83.7
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 3.9e-50 203.0 114 84.2
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 5.6e-49 199.1 117 81.2
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.6e-43 181.0 122 69.7
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 2.5e-41 173.7 94 88.3
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 5.6e-41 172.6 101 80.2
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 5.4e-36 156.0 83 86.7
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.0e-34 151.8 121 67.8
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.1e-27 127.5 70 87.1
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 7.9e-27 125.6 95 66.3
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.9e-23 112.5 77 70.1
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 1.7e-21 107.8 69 76.8
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 3.2e-20 103.6 74 73.0
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.5e-17 94.0 57 75.4
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.1e-15 88.6 60 70.0
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 8.5e-13 79.0 54 74.1
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.9e-12 77.8 77 54.5
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 2.3e-10 70.9 93 47.3
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 2.5e-09 67.4 31 93.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 4.3e-09 66.6 34 79.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 4.8e-08 63.2 44 68.2
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 4.1e-07 60.1 38 73.7
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 4.1e-07 60.1 38 73.7


User provided reference genes

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