Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 9.0e-249 863.2 463 100.0
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 5.2e-188 661.4 467 77.3
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 6.6e-175 617.8 463 73.4
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 8.9e-172 607.4 466 72.3
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.7e-170 603.2 439 78.6
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.1e-169 600.5 455 75.4
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 2.4e-169 599.4 457 72.9
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 4.1e-169 598.6 451 76.7
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 2.0e-168 596.3 447 74.5
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.9e-166 589.7 473 71.0
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 3.3e-166 589.0 463 70.4
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.4e-164 583.6 483 69.8
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 3.1e-164 582.4 477 70.4
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 3.1e-164 582.4 472 71.4
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 6.8e-164 581.3 477 71.1
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 7.5e-163 577.8 452 71.5
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 1.7e-162 576.6 459 69.1
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.1e-161 573.9 477 70.4
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 7.0e-161 571.2 447 72.9
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 7.0e-161 571.2 468 69.4
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 1.2e-160 570.5 441 72.8
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 2.7e-160 569.3 477 70.2
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 1.3e-159 567.0 455 70.8
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 5.0e-159 565.1 456 72.4
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.3e-158 562.0 459 72.8
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 1.6e-157 560.1 478 69.2
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 2.1e-157 559.7 443 70.2
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 2.1e-157 559.7 450 69.3
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 2.8e-157 559.3 474 69.6
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 6.2e-157 558.1 462 66.5
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 8.1e-157 557.8 445 69.7
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.4e-156 557.0 453 66.9
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.2e-155 553.9 457 67.4
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 3.4e-155 552.4 455 69.0
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 3.4e-155 552.4 492 65.4
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 5.8e-155 551.6 465 66.7
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 1.9e-153 546.6 463 67.2
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.9e-153 546.6 448 67.9
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 4.1e-153 545.4 442 69.7
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 3.5e-152 542.3 464 67.2
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 6.0e-152 541.6 462 63.4
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.3e-151 539.7 453 67.5
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 3.9e-151 538.9 443 68.8
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 1.9e-150 536.6 443 68.8
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 7.3e-150 534.6 445 69.4
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 9.5e-150 534.3 462 64.1
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 2.8e-149 532.7 447 66.7
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 1.1e-148 530.8 444 67.3
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 2.3e-148 529.6 395 77.7
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 2.3e-148 529.6 451 66.5
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 4.4e-147 525.4 442 66.7
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 2.2e-146 523.1 444 66.9
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 2.9e-146 522.7 444 67.6
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.1e-145 520.8 395 76.5
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 1.9e-145 520.0 457 63.5
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 3.5e-144 515.8 445 64.3
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 4.6e-144 515.4 451 65.0
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.0e-143 514.2 441 63.9
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.9e-142 510.0 435 67.1
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 4.3e-142 508.8 442 66.3
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 2.1e-141 506.5 447 65.5
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 2.4e-140 503.1 444 65.5
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 2.0e-139 500.0 450 58.7
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 7.6e-139 498.0 459 64.3
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 7.6e-139 498.0 440 64.5
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.3e-138 497.3 460 60.7
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 8.4e-138 494.6 438 62.8
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.2e-136 490.7 440 58.9
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 1.6e-136 490.3 445 58.7
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 2.1e-136 490.0 415 68.4
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 1.0e-135 487.6 448 60.3
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 3.0e-135 486.1 442 58.1
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 3.9e-135 485.7 508 56.1
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 1.9e-134 483.4 438 58.4
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 9.6e-134 481.1 450 62.9
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.6e-133 480.3 442 63.1
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 1.4e-132 477.2 475 62.5
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.8e-132 476.9 442 57.2
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 5.3e-132 475.3 439 56.9
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 1.2e-131 474.2 456 62.3
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.6e-131 473.0 341 76.2
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 2.2e-130 469.9 446 57.0
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 1.4e-129 467.2 616 51.0
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 3.5e-128 462.6 450 55.6
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 3.9e-127 459.1 438 56.2
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 6.9e-124 448.4 480 52.3
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 8.4e-122 441.4 344 69.2
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 1.6e-120 437.2 338 75.4
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 3.0e-119 433.0 442 59.7
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.2e-115 421.0 446 54.5
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.3e-114 417.5 327 68.2
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 3.9e-111 406.0 370 66.8
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.4e-108 397.5 407 56.0
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 7.2e-105 385.2 304 71.4
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.1e-104 383.6 338 66.9
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.6e-101 374.0 393 60.1
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 7.2e-97 358.6 263 78.3
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 4.5e-91 339.3 398 52.3
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 8.8e-87 325.1 261 70.1
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.7e-85 320.9 396 47.7
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.6e-83 314.3 323 55.1
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 9.1e-76 288.5 282 56.7
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.4e-68 264.6 429 42.4
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.2e-64 251.5 347 50.7
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 9.8e-62 241.9 287 50.9
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 8.0e-56 222.2 343 47.8
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 2.9e-53 213.8 615 30.7
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 8.3e-53 212.2 174 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.3e-47 194.1 254 51.2
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 2.5e-41 174.1 103 83.5
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.8e-40 170.6 185 67.6
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 8.1e-40 169.1 179 60.3
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 3.1e-39 167.2 102 81.4
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.0e-38 164.5 92 84.8
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.7e-37 160.2 150 64.7
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 9.5e-33 145.6 163 60.1
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.5e-30 138.3 112 64.3
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 1.1e-28 132.1 134 59.7
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.3e-26 124.4 368 31.8
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 8.6e-26 122.5 100 64.0
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.9e-20 104.8 161 40.4
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 1.7e-18 98.2 122 50.8
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 5.1e-18 96.7 54 81.5
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.4e-15 87.8 145 37.9
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 3.1e-15 87.4 43 90.7
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 8.4e-13 79.3 49 77.6
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 8.4e-13 79.3 49 77.6
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.1e-12 79.0 83 48.2
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 7.1e-12 76.3 52 69.2
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 2.1e-11 74.7 56 62.5
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 4.6e-11 73.6 50 68.0
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 6.0e-11 73.2 63 63.5
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.3e-08 65.5 41 78.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 3.7e-08 63.9 59 55.9
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 4.8e-08 63.5 39 76.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 4.8e-08 63.5 83 44.6
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 1.4e-07 62.0 79 46.8
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 1.8e-07 61.6 33 84.8


User provided reference genes

Program Settings