Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.1e-229 800.0 542 100.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 6.9e-200 701.0 543 78.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.1e-189 667.2 583 76.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.1e-188 662.9 543 76.4
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.1e-184 648.7 543 74.2
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.7e-177 626.7 545 71.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-177 626.3 545 71.4
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.8e-176 623.2 545 72.8
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.5e-175 620.2 554 69.9
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.7e-174 616.7 544 76.5
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 2.2e-174 616.3 546 71.8
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 6.5e-174 614.8 544 73.2
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 8.5e-174 614.4 544 68.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.0e-171 607.4 543 67.8
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.0e-171 605.9 543 75.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.4e-170 601.3 542 71.8
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.2e-169 597.8 540 70.7
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 5.3e-168 595.1 543 72.4
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 2.0e-167 593.2 548 69.7
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 5.9e-167 591.7 541 65.2
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.2e-165 584.7 590 66.6
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.2e-165 584.7 590 66.6
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 6.1e-164 581.6 543 77.5
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-163 580.5 543 64.6
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 3.0e-163 579.3 544 69.7
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.5e-162 577.0 542 70.5
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 4.4e-162 575.5 554 66.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.7e-162 575.1 545 74.7
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 9.7e-162 574.3 540 71.3
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.7e-161 573.5 543 66.5
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.7e-161 572.4 544 68.8
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.4e-160 570.5 545 72.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 4.5e-159 565.5 545 61.8
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.3e-158 563.9 542 70.7
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.1e-157 560.8 544 68.2
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 5.5e-157 558.5 545 68.3
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.6e-156 557.0 545 63.7
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.8e-155 551.2 544 63.8
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.0e-154 550.1 547 65.8
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.6e-154 549.7 549 63.4
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 7.5e-154 548.1 557 69.1
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.7e-153 547.0 497 68.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.3e-153 545.0 553 68.0
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.0e-151 540.0 545 66.8
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.7e-151 539.7 553 67.5
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.5e-151 539.3 578 65.2
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 8.5e-150 534.6 553 67.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.5e-149 533.9 546 65.2
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.2e-149 532.3 553 60.0
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.1e-148 530.0 545 62.8
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.6e-148 529.3 576 60.4
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 4.7e-148 528.9 566 61.8
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 4.7e-148 528.9 513 72.7
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.0e-147 527.7 541 69.1
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.3e-147 526.6 547 63.4
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 3.0e-147 526.2 550 67.3
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 2.0e-146 523.5 529 67.7
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.4e-146 522.7 550 64.9
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 6.3e-145 518.5 561 67.0
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.4e-144 516.5 556 64.0
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.1e-144 516.2 535 62.1
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.0e-143 513.5 554 63.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 2.0e-143 513.5 542 60.0
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 7.7e-143 511.5 541 58.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 7.7e-143 511.5 545 59.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.8e-142 509.2 586 59.9
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.6e-142 508.1 539 57.3
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.5e-141 507.3 557 65.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.6e-140 503.8 544 66.7
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.6e-140 503.8 553 61.5
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.6e-140 503.8 559 71.2
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 6.4e-137 491.9 551 62.8
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.1e-136 491.1 515 70.5
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.8e-136 490.3 544 58.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-135 487.3 561 59.9
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 4.6e-135 485.7 550 65.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.9e-135 485.3 552 59.4
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.0e-134 482.3 544 62.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 9.5e-133 478.0 549 70.5
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 6.2e-132 475.3 548 55.7
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.1e-131 473.0 547 65.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 5.2e-131 472.2 548 64.8
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 7.5e-130 468.4 551 68.6
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.3e-129 467.6 535 59.4
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.3e-129 467.6 544 59.4
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.4e-128 464.2 551 63.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 2.4e-128 463.4 564 61.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.1e-128 462.6 579 57.0
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 7.0e-128 461.8 516 63.2
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 9.2e-128 461.5 551 63.0
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.2e-127 461.1 546 66.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.3e-126 457.6 554 66.4
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 7.3e-125 451.8 487 62.8
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.2e-124 451.1 505 58.4
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.8e-124 449.9 538 57.8
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 4.7e-124 449.1 505 58.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 6.2e-124 448.7 551 62.6
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 6.2e-124 448.7 551 62.6
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 8.1e-124 448.4 549 62.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 8.9e-123 444.9 530 63.0
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.6e-122 443.4 565 52.6
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 7.5e-122 441.8 549 62.1
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 9.8e-122 441.4 549 61.0
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 3.7e-121 439.5 538 52.6
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.4e-120 437.6 359 69.9
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.4e-120 437.6 546 51.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.0e-118 431.4 466 67.4
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 3.0e-118 429.9 537 57.7
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.4e-112 411.0 503 65.0
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 4.6e-111 406.0 839 40.0
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 5.6e-109 399.1 549 55.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.1e-107 394.8 467 64.9
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 3.1e-107 393.3 487 56.9
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 9.9e-106 388.3 553 53.5
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.2e-105 387.1 533 52.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.1e-103 380.6 537 55.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.6e-100 370.9 523 64.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 4.5e-98 362.8 544 51.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.6e-98 362.1 587 47.9
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 2.2e-97 360.5 364 71.7
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 4.2e-96 356.3 554 48.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 7.9e-95 352.1 548 47.1
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 7.9e-95 352.1 556 48.4
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 5.1e-94 349.4 411 63.3
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 8.7e-94 348.6 207 79.2
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 3.6e-92 343.2 540 51.5
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 3.6e-92 343.2 540 51.5
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.2e-89 334.0 554 43.5
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 3.5e-87 326.6 195 79.5
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 6.0e-87 325.9 540 41.3
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.3e-86 323.9 554 43.1
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 8.1e-84 315.5 561 42.2
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-83 315.1 553 43.0
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-83 315.1 553 43.0
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.1e-83 313.5 546 43.8
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.0e-83 312.0 546 43.6
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 8.4e-81 305.4 445 59.8
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.7e-76 290.0 427 50.8
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 4.1e-75 286.6 324 69.8
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.1e-69 268.5 369 71.8
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.4e-67 261.5 212 58.5
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.8e-60 237.3 371 43.7
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.4e-58 230.3 368 60.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 6.1e-55 219.5 312 49.4
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.1e-47 193.0 511 35.6
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.1e-40 172.2 238 51.7
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.3e-38 164.5 101 74.3
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.2e-36 157.9 244 50.0
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-35 155.2 214 52.3
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.8e-31 141.0 210 52.9
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-30 137.9 139 50.4
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 3.7e-28 130.6 175 53.7
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 4.7e-23 113.6 140 51.4
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.1e-23 113.2 207 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.4e-21 107.5 140 40.7
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.4e-21 107.1 99 52.5
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.2e-20 104.8 72 72.2
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-19 101.3 214 45.3
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.2e-18 99.0 56 85.7
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.2e-18 99.0 111 55.9
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.0e-18 98.2 110 60.9
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.5e-18 97.4 113 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.0e-17 95.9 255 37.3
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 8.6e-17 92.8 73 72.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 8.6e-17 92.8 73 72.6
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.1e-16 92.4 51 82.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.2e-15 89.0 176 58.5
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 4.7e-15 87.0 54 66.7
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.4e-13 80.9 99 49.5
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.1e-11 75.9 75 53.3
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 4.1e-11 73.9 59 59.3
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.1e-11 73.9 98 48.0
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 7.0e-11 73.2 130 33.8
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 6.0e-10 70.1 94 54.3
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 6.6e-09 66.6 64 56.2
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.1e-08 65.9 54 64.8
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 4.7e-07 60.5 185 34.1
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 6.2e-07 60.1 168 29.8
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 1.8e-06 58.5 116 32.8


User provided reference genes

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