Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 4.2e-238 827.8 469 100.0
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.2e-155 553.9 442 68.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.1e-153 547.4 437 68.0
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 2.5e-153 546.2 476 64.5
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 3.5e-152 542.3 472 63.1
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 3.0e-151 539.3 487 61.8
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.5e-150 537.0 461 62.9
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 4.3e-150 535.4 440 69.5
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 2.8e-149 532.7 467 63.2
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 8.2e-149 531.2 437 66.1
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.3e-148 528.5 454 64.3
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.0e-147 526.6 473 62.4
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 4.5e-147 525.4 477 60.8
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 1.7e-146 523.5 430 68.1
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 3.8e-146 522.3 435 63.9
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 3.8e-146 522.3 449 66.1
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 5.0e-146 521.9 475 66.1
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 8.5e-146 521.2 437 65.9
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 8.5e-146 521.2 436 65.4
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 5.5e-145 518.5 468 59.6
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 7.2e-145 518.1 473 62.8
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 9.4e-145 517.7 456 63.2
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 3.6e-144 515.8 445 64.3
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 3.6e-144 515.8 464 63.6
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 3.9e-143 512.3 440 65.2
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 6.7e-143 511.5 470 63.0
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 8.8e-143 511.1 437 68.6
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.1e-142 510.8 461 62.3
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 1.5e-142 510.4 440 63.6
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 2.5e-142 509.6 432 64.4
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 2.5e-142 509.6 439 65.6
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.3e-142 508.8 442 64.7
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 7.4e-142 508.1 467 59.5
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 9.7e-142 507.7 438 63.5
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 9.7e-142 507.7 459 62.5
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 2.2e-141 506.5 433 64.2
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.8e-141 506.1 473 59.4
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.8e-141 506.1 457 61.3
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.8e-141 506.1 433 68.6
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.1e-140 504.2 472 59.7
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.1e-140 504.2 497 57.5
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 1.5e-139 500.4 462 60.8
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.6e-139 499.6 457 60.4
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 7.7e-139 498.0 443 62.8
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 7.7e-139 498.0 430 62.1
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 1.7e-138 496.9 430 62.1
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 2.9e-138 496.1 431 62.6
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 1.4e-137 493.8 429 62.5
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 2.7e-136 489.6 435 61.6
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 3.6e-136 489.2 455 66.2
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 6.1e-136 488.4 439 61.0
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.0e-135 486.1 441 63.0
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 1.1e-134 484.2 469 57.4
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 4.4e-134 482.3 429 60.8
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 1.4e-132 477.2 442 61.8
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 1.8e-132 476.9 429 61.1
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 1.8e-132 476.9 451 59.9
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 4.1e-132 475.7 466 59.0
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 7.0e-132 474.9 429 66.4
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 1.3e-130 470.7 416 63.7
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.1e-129 467.6 454 57.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 5.5e-129 465.3 462 60.0
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 7.2e-129 464.9 437 61.3
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 9.4e-129 464.5 431 57.5
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 1.4e-127 460.7 455 54.9
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 5.2e-127 458.8 451 60.5
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 8.8e-127 458.0 455 56.5
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 1.1e-126 457.6 433 58.7
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 2.0e-126 456.8 431 59.6
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 2.8e-125 453.0 441 56.9
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 6.3e-125 451.8 433 58.7
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 6.3e-125 451.8 435 57.7
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 1.1e-124 451.1 471 56.5
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 1.8e-124 450.3 455 54.3
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.6e-123 447.2 465 57.2
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 5.9e-123 445.3 481 55.9
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 5.9e-123 445.3 427 56.4
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 6.5e-122 441.8 455 57.8
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 6.5e-122 441.8 431 59.2
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 1.9e-121 440.3 477 52.6
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 1.0e-119 434.5 463 54.0
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 2.0e-118 430.3 473 55.2
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 6.3e-117 425.2 646 44.4
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 5.5e-113 412.1 339 65.8
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 4.8e-109 399.1 312 66.7
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 3.1e-108 396.4 394 55.8
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 9.1e-108 394.8 401 58.4
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 3.5e-107 392.9 439 51.7
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 3.8e-106 389.4 400 57.8
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 6.6e-106 388.7 315 68.6
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.5e-105 387.5 438 52.1
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 8.0e-104 381.7 351 59.8
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 6.4e-93 345.5 343 58.9
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 2.7e-91 340.1 319 59.6
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.8e-88 330.1 349 57.0
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 3.4e-86 323.2 387 52.2
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 5.6e-81 305.8 392 48.2
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 6.8e-79 298.9 388 46.9
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 9.9e-78 295.0 319 55.8
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 9.2e-76 288.5 197 73.6
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 4.3e-73 279.6 299 53.2
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 9.9e-70 268.5 268 56.7
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.7e-66 257.7 426 41.5
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 9.9e-54 215.3 379 39.8
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 2.9e-53 213.8 312 51.0
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 4.9e-53 213.0 273 46.2
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 1.6e-51 208.0 209 54.5
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 6.7e-50 202.6 331 44.4
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.3e-40 171.8 156 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.4e-39 168.3 250 48.4
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 4.1e-39 166.8 98 79.6
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.3e-37 161.8 93 80.6
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 1.9e-36 157.9 98 78.6
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 6.9e-31 139.4 125 61.6
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 7.9e-27 125.9 179 44.1
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.1e-23 115.5 95 62.1
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.1e-23 114.0 177 48.0
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 9.1e-23 112.5 102 56.9
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 2.2e-21 107.8 106 52.8
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 9.4e-20 102.4 343 29.7
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.7e-19 100.9 112 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.2e-16 91.3 135 40.0
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 6.3e-16 89.7 54 75.9
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 1.6e-14 85.1 102 50.0
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 2.6e-14 84.3 45 80.0
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 1.9e-12 78.2 83 47.0
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 5.5e-12 76.6 48 70.8
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 5.5e-12 76.6 48 70.8
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 1.8e-10 71.6 56 62.5
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 1.8e-10 71.6 52 65.4
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 1.7e-08 65.1 45 62.2
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.8e-08 64.3 41 78.0
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 3.7e-08 63.9 35 82.9
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 4.8e-08 63.5 33 87.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 4.8e-08 63.5 83 44.6
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 1.8e-07 61.6 82 46.3
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.0e-06 58.2 59 50.8
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 2.0e-06 58.2 37 78.4


User provided reference genes

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