Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 4.5e-252 874.4 536 100.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 7.6e-191 671.0 540 77.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 7.6e-191 671.0 543 75.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 8.4e-190 667.5 546 76.9
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 6.0e-188 661.4 574 74.9
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.9e-187 658.7 542 72.7
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.4e-183 645.6 544 74.8
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.4e-183 645.2 588 71.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.4e-183 645.2 588 71.9
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.8e-183 644.8 542 74.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.9e-183 644.0 546 74.2
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.7e-182 643.3 546 73.8
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.1e-180 636.3 551 75.0
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.0e-179 634.0 531 71.9
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.3e-179 633.6 545 73.2
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 8.7e-179 630.9 542 73.8
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 9.6e-178 627.5 539 69.6
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.3e-177 627.1 542 74.5
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 3.6e-177 625.5 543 76.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 6.2e-177 624.8 539 70.3
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 6.2e-177 624.8 526 78.3
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 2.4e-176 622.9 549 73.8
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.5e-175 620.2 542 69.6
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.5e-175 620.2 556 71.8
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.9e-174 615.9 543 66.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.8e-174 615.5 540 72.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.4e-173 612.8 554 75.5
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-171 605.9 543 69.1
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.5e-170 603.6 545 73.6
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 4.8e-169 598.6 554 69.0
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.1e-168 595.9 545 68.4
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 6.9e-168 594.7 546 67.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.4e-167 592.4 545 68.1
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 4.9e-166 588.6 550 66.7
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.5e-164 582.4 543 68.0
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.6e-164 582.0 531 68.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.9e-164 581.3 554 72.6
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.0e-163 580.9 546 68.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.8e-163 580.1 537 69.8
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.8e-163 580.1 543 68.7
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.9e-163 578.9 554 72.2
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.5e-162 577.0 546 66.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.5e-162 577.0 545 70.3
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 5.6e-162 575.1 545 71.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 7.4e-162 574.7 542 68.3
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.1e-161 573.2 545 69.7
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.1e-160 570.9 545 72.1
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.0e-160 567.8 554 71.3
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.5e-159 567.0 546 65.6
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.0e-159 566.6 549 70.9
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 7.6e-159 564.7 502 69.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.0e-158 564.3 544 68.4
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.3e-158 563.9 502 68.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 3.8e-158 562.4 543 66.1
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 7.1e-157 558.1 551 71.1
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 4.6e-156 555.4 567 66.1
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 7.9e-156 554.7 546 63.7
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.8e-155 553.5 553 66.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 3.9e-155 552.4 483 73.1
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 5.1e-155 552.0 558 66.8
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-153 547.0 559 69.2
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 4.8e-153 545.4 834 47.8
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 6.3e-153 545.0 550 65.1
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 6.3e-153 545.0 541 64.3
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 6.3e-153 545.0 535 65.8
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.8e-152 543.5 542 70.5
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 3.1e-152 542.7 514 71.2
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 4.1e-152 542.3 544 71.0
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 4.1e-152 542.3 544 65.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.3e-150 537.3 586 63.0
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.7e-150 537.0 564 66.0
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 5.0e-150 535.4 544 65.6
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 7.2e-149 531.6 543 62.2
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.6e-148 530.4 495 64.6
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.6e-148 529.3 552 68.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 4.6e-148 528.9 527 70.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 4.6e-148 528.9 574 59.1
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.6e-145 520.4 550 68.0
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.8e-145 519.6 540 58.5
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 8.2e-145 518.1 360 81.1
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 8.2e-145 518.1 553 62.2
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.4e-144 517.3 514 69.1
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 5.3e-144 515.4 551 55.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 8.5e-142 508.1 548 64.2
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.9e-141 506.9 546 62.8
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 7.9e-140 501.5 551 67.3
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 7.9e-140 501.5 551 67.3
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-139 501.1 549 67.4
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.6e-138 496.5 569 56.4
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 5.7e-138 495.4 549 66.8
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 5.7e-138 495.4 545 65.9
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.2e-137 493.4 551 65.5
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.3e-137 491.9 585 55.4
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.1e-136 489.2 545 55.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.2e-135 487.6 548 65.9
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-135 486.1 549 62.5
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.5e-135 485.7 545 65.5
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.8e-134 482.6 560 55.7
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.4e-133 480.7 514 66.5
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 7.2e-133 478.4 537 56.2
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.7e-132 476.5 549 64.1
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 3.6e-132 476.1 537 61.8
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.8e-131 473.8 560 58.4
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.8e-129 466.5 550 62.0
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.8e-128 463.8 498 68.1
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.0e-128 461.8 578 53.5
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.0e-126 455.7 542 60.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 6.5e-126 455.3 558 62.4
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.1e-124 450.3 548 57.8
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.7e-123 445.3 538 61.5
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.7e-122 442.2 544 56.6
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 6.3e-121 438.7 547 51.7
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.1e-120 438.0 550 61.1
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.3e-118 431.0 541 56.6
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.7e-118 430.6 468 66.7
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 4.0e-115 419.5 539 58.3
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 4.0e-115 419.5 539 58.3
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 8.8e-115 418.3 487 60.2
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.0e-114 417.2 598 51.5
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 8.0e-108 395.2 469 64.8
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.3e-105 387.9 554 51.3
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 2.4e-104 383.6 413 67.3
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 4.1e-104 382.9 558 51.6
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.5e-101 373.6 446 65.5
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 7.3e-101 372.1 554 50.5
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.9e-97 359.4 325 62.5
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.4e-96 357.8 541 44.2
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.3e-94 351.3 364 70.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.7e-94 350.9 518 56.9
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-92 344.0 551 43.7
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-90 337.8 547 43.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 3.4e-90 336.7 551 43.7
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 5.8e-90 335.9 548 44.5
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-89 334.0 547 43.5
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.9e-89 332.8 541 44.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.9e-89 332.8 541 44.2
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 2.0e-87 327.4 326 76.7
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 4.0e-83 313.2 195 78.5
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.2e-80 303.5 424 49.5
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.1e-78 296.2 352 55.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 7.1e-72 275.8 367 65.9
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 2.2e-65 254.2 310 56.5
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 9.3e-64 248.8 370 62.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.6e-63 248.1 307 50.5
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.8e-58 229.6 349 53.9
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.6e-50 202.6 504 35.1
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.6e-47 194.9 245 56.3
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.1e-37 162.2 176 76.1
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.1e-35 155.6 100 71.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.4e-35 154.5 164 71.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-33 147.1 235 39.6
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 4.2e-32 143.7 212 50.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.3e-25 122.1 212 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 7.9e-23 112.8 140 43.6
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 7.9e-23 112.8 269 36.1
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.5e-21 108.6 176 47.2
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 6.9e-19 99.8 105 59.0
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.0e-18 98.2 89 70.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.6e-18 97.8 56 83.9
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.8e-17 94.0 256 35.5
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.0e-17 93.6 206 37.4
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 3.2e-16 90.9 54 68.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 9.4e-16 89.4 69 71.0
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.4e-16 89.4 69 71.0
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.2e-15 89.0 312 27.6
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.6e-15 88.6 80 60.0
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 4.7e-15 87.0 58 67.2
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.1e-15 86.7 96 53.1
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-14 85.5 106 50.9
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-14 84.3 114 47.4
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.9e-14 84.0 97 53.6
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-13 82.0 209 38.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 4.8e-12 77.0 65 58.5
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.9e-10 70.1 130 30.0
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 2.2e-09 68.2 181 38.1
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.1e-08 65.9 54 66.7
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 4.2e-08 63.9 95 42.1
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.5e-08 63.5 64 54.7
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 1.4e-06 58.9 63 44.4


User provided reference genes

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