Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 3.1e-273 944.5 468 100.0
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 2.4e-177 625.9 466 66.3
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 1.6e-173 613.2 467 64.0
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 8.1e-173 610.9 469 65.0
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.4e-172 609.4 469 64.0
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 2.6e-171 605.9 468 64.7
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 6.0e-168 594.7 468 63.9
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.5e-166 590.1 463 62.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 4.0e-164 582.0 467 61.2
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 3.4e-163 578.9 467 62.3
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 3.4e-163 578.9 467 62.3
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 6.4e-162 574.7 456 62.3
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.1e-161 573.9 470 60.6
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 9.3e-161 570.9 466 60.7
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.1e-160 569.7 472 61.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 2.1e-160 569.7 467 61.5
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 3.5e-160 568.9 470 60.2
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 5.1e-159 565.1 469 60.8
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.5e-158 562.8 470 59.8
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 2.1e-157 559.7 456 60.7
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 3.7e-157 558.9 469 59.1
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 4.8e-157 558.5 458 60.0
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.1e-156 557.4 467 59.5
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 1.4e-156 557.0 468 59.0
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 6.9e-156 554.7 463 59.6
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 6.9e-156 554.7 469 59.3
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.0e-155 553.1 472 57.8
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 2.0e-155 553.1 468 59.8
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.4e-155 552.4 467 60.2
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.0e-154 550.8 472 59.1
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 2.9e-154 549.3 468 59.0
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 3.8e-154 548.9 468 59.4
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 8.4e-154 547.7 468 58.3
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 8.4e-154 547.7 469 57.8
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.6e-152 543.5 466 58.2
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 4.6e-152 542.0 460 58.5
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.3e-151 540.4 466 57.5
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.8e-149 532.7 465 57.8
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.8e-149 532.7 467 56.3
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.8e-149 532.7 468 57.7
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 6.2e-149 531.6 469 58.2
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 1.1e-148 530.8 466 56.4
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 9.0e-148 527.7 465 57.4
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.2e-147 527.3 390 64.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 3.4e-147 525.8 469 57.6
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 7.6e-147 524.6 469 58.2
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 2.9e-146 522.7 425 58.4
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.9e-146 522.7 450 56.4
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.1e-145 518.1 466 55.2
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 1.6e-144 516.9 455 55.4
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.7e-144 516.2 452 56.0
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 3.5e-144 515.8 455 55.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.6e-144 515.4 450 55.6
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 4.6e-144 515.4 468 55.8
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 6.1e-144 515.0 468 56.2
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.8e-143 513.5 461 55.5
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.8e-143 513.5 454 54.6
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 2.3e-143 513.1 461 55.1
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 3.9e-143 512.3 468 55.1
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 8.7e-143 511.1 466 54.7
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.5e-142 509.6 462 55.0
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 2.5e-142 509.6 455 55.6
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 5.7e-142 508.4 455 54.5
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 5.7e-142 508.4 453 55.2
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 9.7e-142 507.7 460 54.8
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 1.3e-141 507.3 462 55.4
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 2.2e-141 506.5 431 54.5
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 2.2e-141 506.5 465 55.3
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 3.7e-141 505.8 452 54.9
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 6.3e-141 505.0 455 54.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.8e-140 503.4 461 53.1
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 2.4e-140 503.1 431 55.0
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.2e-139 500.7 431 54.3
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.5e-139 500.4 454 53.7
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.6e-139 499.6 461 52.9
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 4.5e-139 498.8 467 52.5
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.3e-138 497.3 462 52.8
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 2.2e-138 496.5 455 53.6
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 3.8e-138 495.7 457 54.7
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 5.0e-138 495.4 455 53.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 1.1e-137 494.2 466 51.5
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 3.6e-136 489.2 431 53.4
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 3.6e-136 489.2 431 53.4
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 3.6e-136 489.2 431 53.4
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 3.9e-135 485.7 457 52.5
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 5.7e-134 481.9 474 51.5
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 4.1e-132 475.7 431 51.5
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 9.1e-132 474.6 449 50.3
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.0e-130 471.1 433 52.0
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 3.8e-130 469.2 460 49.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 2.1e-128 463.4 431 52.7
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.8e-127 460.3 458 49.6
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 3.0e-119 433.0 438 47.5
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 3.9e-119 432.6 460 46.5
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 6.7e-119 431.8 470 49.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 8.5e-114 414.8 382 50.0
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.5e-110 404.1 466 44.4
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.7e-101 374.0 335 57.0
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 3.3e-97 359.8 460 40.9
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.1e-65 255.0 390 39.7
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 2.4e-63 247.3 406 35.5
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.9e-61 240.4 225 54.7
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 7.3e-57 225.7 183 60.1
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 6.0e-51 206.1 438 29.5
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 6.9e-47 192.6 424 30.0
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 3.9e-42 176.8 224 44.2
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.1e-36 158.7 316 33.2
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.6e-35 154.8 198 44.4
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 6.7e-34 149.4 133 54.9
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 5.7e-33 146.4 483 25.5
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 8.2e-32 142.5 466 27.9
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 3.4e-30 137.1 263 31.2
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 8.4e-29 132.5 203 37.9
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.4e-23 115.2 128 43.0
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 5.9e-14 83.2 479 19.8
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 4.4e-09 67.0 260 26.2
CiPaw.13G160000 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.4e-09 66.2 178 27.0
SMO196G0167 Selaginella moellendorffii HOM05D006354 ORTHO05D007773 1.8e-07 61.6 219 21.0
MD07G1097800 Malus domestica HOM05D000300 ORTHO05D000383 2.4e-07 61.2 155 29.0
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 2.4e-07 61.2 155 29.0
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 2.4e-07 61.2 54 59.3
MBI11_g44567_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 3.1e-07 60.8 185 25.4
PSO017G3749 Papaver somniferum HOM05D000001 ORTHO05D000003 3.1e-07 60.8 213 24.9
BcaNung05195 Brassica carinata HOM05D000001 ORTHO05D000003 5.3e-07 60.1 179 27.4
BolC1t00095H Brassica oleracea HOM05D000001 ORTHO05D000003 5.3e-07 60.1 179 27.4
Manes.01G273600 Manihot esculenta HOM05D000300 ORTHO05D000383 5.3e-07 60.1 155 29.0
Gorai.002G240300 Gossypium raimondii HOM05D000001 ORTHO05D000003 7.0e-07 59.7 178 24.2
A01p00840 Brassica napus HOM05D000001 ORTHO05D000003 9.1e-07 59.3 179 26.3
Aa31LG6G1560 Aethionema arabicum HOM05D000001 ORTHO05D006238 1.2e-06 58.9 169 25.4
CiPaw.14G019400 Carya illinoinensis HOM05D000300 ORTHO05D000383 1.2e-06 58.9 124 31.5
C01p00970 Brassica napus HOM05D000001 ORTHO05D000003 1.6e-06 58.5 179 26.8
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.6e-06 58.5 124 30.6
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 1.6e-06 58.5 124 30.6
Gohir.A01G206700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.0e-06 58.2 179 25.1
Gohir.D01G196100 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.0e-06 58.2 178 24.2
MD02G1219200 Malus domestica HOM05D000300 ORTHO05D000383 2.0e-06 58.2 155 30.3
SMO202G0085 Selaginella moellendorffii HOM05D000001 ORTHO05D376324 2.0e-06 58.2 164 25.0
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 2.0e-06 58.2 155 28.4
Dinv34113 Davidia involucrata HOM05D000001 ORTHO05D000003 2.6e-06 57.8 177 25.4
Manes.05G056400 Manihot esculenta HOM05D000300 ORTHO05D000383 2.6e-06 57.8 124 30.6
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 2.6e-06 57.8 155 27.7
Thhalv10000054m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 4.5e-06 57.0 177 24.9
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 4.5e-06 57.0 155 28.4
EL10Ac3g05727 Beta vulgaris HOM05D000001 ORTHO05D010013 5.9e-06 56.6 163 27.0
CSS0008145 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010013 5.9e-06 56.6 162 27.2
Cfa016603 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.9e-06 56.6 178 23.6
AT5G61800 Arabidopsis thaliana HOM05D000001 ORTHO05D010118 7.7e-06 56.2 177 26.0


User provided reference genes

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