Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g35870 Coffea canephora HOM05D002594 ORTHO05D003499 1.8e-61 239.2 130 100.0
Cc09_g04890 Coffea canephora HOM05D002594 ORTHO05D003499 5.0e-56 221.1 113 100.0
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.3e-51 206.5 118 87.3
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 1.7e-51 206.1 118 87.3
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 2.8e-51 205.3 118 87.3
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 4.9e-51 204.5 118 85.6
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 4.9e-51 204.5 118 85.6
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 8.3e-51 203.8 124 86.3
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 1.4e-50 203.0 116 88.8
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.4e-50 203.0 118 86.4
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 2.4e-50 202.2 117 85.5
GSVIVG01012058001 Vitis vinifera HOM05D002594 ORTHO05D003499 3.1e-50 201.8 123 86.2
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 4.1e-50 201.4 116 86.2
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 1.2e-49 199.9 114 86.8
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.6e-49 199.5 118 85.6
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.0e-49 199.1 118 84.7
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 2.7e-49 198.7 124 82.3
FvH4_4g07440 Fragaria vesca HOM05D002594 ORTHO05D003499 3.5e-49 198.4 118 85.6
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 5.9e-49 197.6 118 84.7
Lj5g0011873 Lotus japonicus HOM05D002594 ORTHO05D003499 7.8e-49 197.2 116 85.3
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 1.0e-48 196.8 117 83.8
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 1.0e-48 196.8 130 82.3
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 1.3e-48 196.4 115 86.1
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 1.7e-48 196.1 116 84.5
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 2.9e-48 195.3 115 85.2
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.9e-48 195.3 118 83.9
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 3.9e-48 194.9 114 85.1
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 3.9e-48 194.9 116 83.6
CsaV3_2G033800 Cucumis sativus L. HOM05D002594 ORTHO05D003499 5.0e-48 194.5 115 85.2
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 5.0e-48 194.5 114 86.0
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 5.0e-48 194.5 113 85.8
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 6.6e-48 194.1 115 83.5
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 8.6e-48 193.7 113 85.0
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 8.6e-48 193.7 114 85.1
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 1.1e-47 193.4 114 85.1
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 1.1e-47 193.4 114 84.2
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 1.1e-47 193.4 114 84.2
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 1.1e-47 193.4 129 79.1
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 1.1e-47 193.4 115 84.3
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 1.5e-47 193.0 114 84.2
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 1.5e-47 193.0 114 84.2
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 1.9e-47 192.6 115 83.5
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 2.5e-47 192.2 114 84.2
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 2.5e-47 192.2 122 82.0
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 3.3e-47 191.8 113 85.0
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 4.3e-47 191.4 114 83.3
Peaxi162Scf00420g00339 Petunia axillaris HOM05D002594 ORTHO05D003499 4.3e-47 191.4 118 81.4
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 4.3e-47 191.4 114 84.2
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 4.3e-47 191.4 114 84.2
Actinidia27174 Actinidia chinensis HOM05D002594 ORTHO05D003499 5.6e-47 191.0 114 84.2
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 7.3e-47 190.7 114 84.2
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 7.3e-47 190.7 118 81.4
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 7.3e-47 190.7 114 83.3
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 7.3e-47 190.7 114 84.2
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 7.3e-47 190.7 122 82.0
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 7.3e-47 190.7 114 83.3
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 7.3e-47 190.7 115 83.5
Prupe.3G079300 Prunus persica HOM05D002594 ORTHO05D003499 9.5e-47 190.3 126 77.8
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 1.2e-46 189.9 114 82.5
Nitab4.5_0000646g0320 Nicotiana tabacum HOM05D002594 ORTHO05D003499 1.2e-46 189.9 123 80.5
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 1.6e-46 189.5 114 81.6
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 1.6e-46 189.5 114 85.1
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 1.6e-46 189.5 114 85.1
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 1.6e-46 189.5 113 85.0
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 2.1e-46 189.1 113 83.2
MBI03_g24017_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 2.1e-46 189.1 114 80.7
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 2.1e-46 189.1 114 83.3
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 2.1e-46 189.1 114 82.5
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 2.1e-46 189.1 114 82.5
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 2.1e-46 189.1 114 83.3
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 2.8e-46 188.7 124 79.0
Cpa.g.sc1346.2 Carica papaya HOM05D002594 ORTHO05D003499 2.8e-46 188.7 115 84.3
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 2.8e-46 188.7 114 84.2
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 2.8e-46 188.7 114 84.2
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 3.6e-46 188.3 114 82.5
Prupe.3G162200 Prunus persica HOM05D002594 ORTHO05D003499 3.6e-46 188.3 115 81.7
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 4.7e-46 188.0 114 84.2
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 6.1e-46 187.6 115 84.3
Oeu046918.1 Olea europaea HOM05D002594 ORTHO05D003499 6.1e-46 187.6 119 82.4
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 8.0e-46 187.2 114 78.9
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 8.0e-46 187.2 113 82.3
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 1.0e-45 186.8 114 82.5
RcHm_v2.0_Chr7g0192451 Rosa chinensis HOM05D002594 ORTHO05D003499 1.0e-45 186.8 132 72.7
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 1.4e-45 186.4 114 80.7
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 1.4e-45 186.4 113 83.2
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 1.4e-45 186.4 113 85.8
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 1.4e-45 186.4 114 78.9
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 1.4e-45 186.4 111 83.8
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 2.3e-45 185.7 113 82.3
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 5.2e-45 184.5 114 80.7
Medtr7g063860 Medicago truncatula HOM05D002594 ORTHO05D003499 6.8e-45 184.1 115 79.1
Aqoxy5G03555 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 8.9e-45 183.7 124 72.6
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 8.9e-45 183.7 114 80.7
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 1.2e-44 183.3 112 83.0
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 1.2e-44 183.3 113 81.4
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.2e-44 183.3 112 78.6
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 4.4e-44 181.4 114 80.7
unitig_37.g12045 Utricularia gibba HOM05D002594 ORTHO05D003499 4.4e-44 181.4 113 77.9
FAN08G0321 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.2e-43 179.1 131 71.0
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 8.3e-43 177.2 104 82.7
ECA247G2788 Erigeron canadensis HOM05D002594 ORTHO05D003499 2.4e-42 175.6 118 77.1
RcHm_v2.0_Chr1g0364591 Rosa chinensis HOM05D002594 ORTHO05D003499 2.4e-42 175.6 115 76.5
Nitab4.5_0002805g0060 Nicotiana tabacum HOM05D002594 ORTHO05D003499 4.1e-42 174.9 113 77.9
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 1.2e-41 173.3 114 71.1
RcHm_v2.0_Chr7g0191091 Rosa chinensis HOM05D002594 ORTHO05D003499 2.0e-41 172.6 111 76.6
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 2.7e-41 172.2 114 78.1
FAN04G1383 Fragaria x ananassa HOM05D002594 ORTHO05D003499 4.6e-41 171.4 110 77.3
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 4.6e-41 171.4 114 71.1
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 6.0e-41 171.0 106 80.2
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 3.0e-40 168.7 128 71.9
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 8.6e-40 167.2 115 75.7
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 1.1e-39 166.8 113 73.5
Mapoly0053s0080 Marchantia polymorpha HOM05D002594 ORTHO05D003499 1.9e-39 166.0 116 71.6
FAN13G0003 Fragaria x ananassa HOM05D002594 ORTHO05D003499 4.3e-39 164.9 110 74.5
Zm00001eb128190 Zea mays HOM05D002594 ORTHO05D003499 9.5e-39 163.7 111 73.0
BcaB03g13089 Brassica carinata HOM05D002594 ORTHO05D003499 1.6e-38 162.9 113 77.0
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 2.8e-38 162.2 112 75.0
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 2.8e-38 162.2 114 75.4
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 2.8e-38 162.2 114 75.4
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 2.8e-38 162.2 114 75.4
FAN18G4310 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.8e-38 162.2 139 64.0
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 4.7e-38 161.4 95 83.2
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 4.7e-38 161.4 114 74.6
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 4.7e-38 161.4 113 75.2
Zm00001eb333220 Zea mays HOM05D002594 ORTHO05D003499 4.7e-38 161.4 110 70.9
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 6.2e-38 161.0 148 63.5
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.4e-37 159.8 114 73.7
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 1.4e-37 159.8 118 72.9
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 1.8e-37 159.5 113 74.3
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 1.8e-37 159.5 114 74.6
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 1.8e-37 159.5 113 74.3
HPP92_018927 Vanilla planifolia HOM05D002594 ORTHO05D003499 1.8e-37 159.5 94 83.0
Pp3c23_15260 Physcomitrium patens HOM05D002594 ORTHO05D003499 2.3e-37 159.1 114 70.2
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 3.1e-37 158.7 118 73.7
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 5.2e-37 157.9 113 73.5
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 1.2e-36 156.8 113 72.6
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 1.2e-36 156.8 113 72.6
MD10G1329400 Malus domestica HOM05D002594 ORTHO05D003499 4.4e-36 154.8 103 75.7
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 5.8e-36 154.5 92 84.8
Thhalv10016290m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 8.3e-35 150.6 116 70.7
SMO116G0104 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 2.4e-34 149.1 116 63.8
Lalb_Chr02g0145441 Lupinus albus HOM05D002594 ORTHO05D003499 5.4e-34 147.9 90 83.3
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 7.0e-34 147.5 125 64.8
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 6.6e-32 141.0 90 80.0
AagrBONN_evm.TU.Sc2ySwM_362.2665 Anthoceros agrestis HOM05D002594 ORTHO05D003499 2.5e-31 139.0 116 63.8
CBR_g33984 Chara braunii HOM05D002594 ORTHO05D003499 7.3e-31 137.5 117 61.5
RcHm_v2.0_Chr7g0192471 Rosa chinensis HOM05D002594 ORTHO05D003499 2.8e-30 135.6 89 76.4
Ah.13g068590 Amaranthus hybridus HOM05D002594 ORTHO05D003499 1.1e-29 133.7 84 79.8
BcaNung05662 Brassica carinata HOM05D002594 ORTHO05D003499 2.2e-27 125.9 100 71.0
BcaNung05664 Brassica carinata HOM05D002594 ORTHO05D003499 3.7e-27 125.2 90 75.6
BcaC05g25380 Brassica carinata HOM05D002594 ORTHO05D003499 4.9e-27 124.8 123 61.8
BcaC05g25382 Brassica carinata HOM05D002594 ORTHO05D003499 2.4e-26 122.5 94 72.3
Carub.0007s2621 Capsella rubella HOM05D002594 ORTHO05D012777 8.6e-24 114.0 127 57.5
A03p50220 Brassica napus HOM05D002594 ORTHO05D012777 1.5e-23 113.2 109 56.9
C09p70470 Brassica napus HOM05D002594 ORTHO05D003499 2.1e-22 109.4 104 57.7
AT1G14640 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.1e-21 107.1 76 73.7
A10p30060 Brassica napus HOM05D002594 ORTHO05D011495 1.1e-21 107.1 105 58.1
BraA10t45046Z Brassica rapa HOM05D002594 ORTHO05D011495 1.1e-21 107.1 105 58.1
HanXRQChr03g0079451 Helianthus annuus HOM05D002594 ORTHO05D003499 1.1e-21 107.1 100 60.0
HPP92_018935 Vanilla planifolia HOM05D002594 ORTHO05D003499 1.4e-21 106.7 86 62.8
C07p48410 Brassica napus HOM05D002594 ORTHO05D012777 6.8e-21 104.4 109 55.0
C07p48480 Brassica napus HOM05D027028 ORTHO05D012777 2.6e-20 102.4 121 52.1
Cre06.g307450 Chlamydomonas reinhardtii HOM05D002594 ORTHO05D003499 9.9e-20 100.5 119 47.1
AL5G17020 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 2.2e-19 99.4 108 55.6
Carub.0007s2532 Capsella rubella HOM05D002594 ORTHO05D012777 2.2e-19 99.4 107 54.2
Carub.0006s0760 Capsella rubella HOM05D002594 ORTHO05D019719 4.9e-19 98.2 123 48.8
Thhalv10015432m.g Eutrema salsugineum HOM05D002594 ORTHO05D011495 8.4e-19 97.4 113 54.0
AL7G39900 Arabidopsis lyrata HOM05D002594 ORTHO05D012777 9.2e-18 94.0 110 55.5
Carub.0006s0564 Capsella rubella HOM05D002594 ORTHO05D003499 1.2e-17 93.6 108 54.6
AUR62002724 Chenopodium quinoa HOM05D002594 ORTHO05D003499 1.1e-15 87.0 61 67.2
Dinv05869 Davidia involucrata HOM05D002594 ORTHO05D003499 1.9e-15 86.3 54 75.9
MCO06G134 Micromonas commoda HOM05D002594 ORTHO05D003499 1.9e-15 86.3 119 47.1
CARHR081890 Cardamine hirsuta HOM05D002594 ORTHO05D003499 3.3e-15 85.5 104 46.2
MSTRG.7590 Avicennia marina HOM05D002594 ORTHO05D003499 2.8e-14 82.4 46 80.4
BcaNung06484 Brassica carinata HOM05D011209 ORTHO05D011495 1.4e-13 80.1 63 69.8
MBI03_g47333_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 3.1e-13 79.0 48 75.0
Lalb_Chr06g0165601 Lupinus albus HOM05D002594 ORTHO05D003499 3.4e-12 75.5 46 73.9
MD16G1250900 Malus domestica HOM05D002594 ORTHO05D003499 4.4e-12 75.1 53 69.8
Thhalv10023046m.g Eutrema salsugineum HOM05D002594 ORTHO05D012777 1.0e-08 63.9 78 53.8
AT5G06890 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.7e-08 63.2 75 54.7
Thhalv10019612m.g Eutrema salsugineum HOM05D009193 ORTHO05D014392 2.3e-08 62.8 78 52.6
Sabra07G0059400 Salix brachista HOM05D002594 ORTHO05D003499 2.3e-08 62.8 34 85.3
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 2.8e-06 55.8 118 34.7
BcaC07g40443 Brassica carinata HOM05D002594 ORTHO05D011495 4.8e-06 55.1 52 61.5


User provided reference genes

Program Settings