Gene: AT5G06890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G06890
  • Transcript Identifier AT5G06890.1
  • Gene Type Coding gene
  • Location Chr5 : 2135743-2135943 : positive

Gene Family Information

  • ID HOM05D002594
  • #Genes/#Species 263/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G06890.1
  • uniprot Q9FL57

Descriptions

  • Description Ubiquitin-like superfamily protein
  • Computational description Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (TAIR:AT5G12280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
Gene OntologymRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006396
ISO
PLAZA Homology (enrichment)RNA processing HOM05D002594

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D002594

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029071 Ubiquitin-like domain superfamily
IPR045146 Splicing factor 3A subunit 1
Mapman id Description
35.1 not assigned.annotated