Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.2e-107 392.1 253 100.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.8e-89 333.2 210 94.8
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.8e-84 315.5 173 95.4
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 3.4e-77 292.4 172 88.4
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-76 290.8 172 87.8
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.3e-76 290.4 225 80.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.3e-76 290.4 225 80.0
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.3e-76 290.4 172 87.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.7e-76 290.0 174 88.5
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 5.0e-76 288.5 225 79.1
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-75 287.3 192 80.2
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.5e-75 286.2 190 85.3
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.2e-75 284.6 177 84.2
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 6.1e-74 281.6 166 87.3
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-73 280.8 197 80.2
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.0e-73 280.8 197 80.2
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.4e-73 280.4 237 70.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.8e-73 280.0 224 77.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.9e-73 278.9 213 74.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 6.7e-73 278.1 154 93.5
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.1e-72 277.3 238 68.9
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.5e-72 276.9 237 70.5
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.5e-72 276.9 172 86.6
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.3e-72 275.8 273 74.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.3e-72 275.8 273 74.0
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.4e-72 274.6 177 84.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 9.7e-72 274.2 179 81.6
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.3e-71 273.9 154 92.2
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.3e-71 273.9 179 81.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.3e-71 273.9 179 81.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.8e-71 271.9 240 69.2
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 6.3e-71 271.6 193 74.1
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 8.2e-71 271.2 199 74.4
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.1e-70 270.8 163 87.1
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-70 270.8 179 79.3
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.4e-70 269.6 190 80.5
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.1e-70 269.2 177 79.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.1e-70 268.9 178 81.5
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 4.1e-70 268.9 197 75.6
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 9.1e-70 267.7 158 86.1
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.0e-69 266.5 164 85.4
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.0e-69 266.5 167 83.2
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.0e-69 266.5 196 71.9
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.6e-69 266.2 164 84.1
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.6e-69 266.2 173 81.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.6e-69 266.2 173 82.1
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.6e-69 266.2 176 80.7
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.5e-69 265.4 183 74.9
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 5.9e-69 265.0 183 76.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 7.7e-69 264.6 179 76.5
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.0e-68 264.2 164 84.8
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.0e-68 264.2 193 75.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.0e-68 264.2 186 76.3
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.3e-68 263.8 166 82.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-68 263.1 186 75.8
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-68 263.1 186 75.8
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.9e-68 262.7 167 82.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.9e-68 262.7 173 78.6
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.9e-68 262.7 204 72.5
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.9e-68 262.7 174 77.0
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.8e-68 262.3 164 83.5
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 3.8e-68 262.3 199 75.9
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 5.0e-68 261.9 167 81.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.5e-68 261.5 154 88.3
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-67 260.4 189 76.7
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.9e-67 260.0 167 82.6
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.9e-67 260.0 152 86.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.5e-67 259.6 196 73.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 2.5e-67 259.6 196 74.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.5e-67 259.6 152 86.2
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.2e-67 259.2 162 84.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 3.2e-67 259.2 162 84.0
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 4.2e-67 258.8 152 86.2
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 5.5e-67 258.5 152 87.5
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 9.4e-67 257.7 166 81.9
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 9.4e-67 257.7 183 77.6
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 9.4e-67 257.7 183 77.6
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.2e-66 257.3 195 72.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 2.7e-66 256.1 167 80.2
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 4.7e-66 255.4 240 65.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.1e-66 255.0 151 87.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 6.1e-66 255.0 154 85.1
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.1e-66 255.0 173 76.9
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 6.1e-66 255.0 146 90.4
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 8.0e-66 254.6 152 85.5
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 8.0e-66 254.6 200 70.5
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 8.0e-66 254.6 189 75.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.0e-65 254.2 177 76.3
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.0e-65 254.2 189 75.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.0e-65 254.2 189 75.7
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.0e-65 254.2 240 64.6
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.0e-65 254.2 242 64.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.4e-65 253.8 153 85.6
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.4e-65 253.8 189 75.1
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.4e-65 253.8 189 75.1
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.4e-65 253.8 189 73.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.8e-65 253.4 159 84.9
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.8e-65 253.4 189 75.1
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.0e-65 252.7 152 86.2
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 4.0e-65 252.3 186 75.8
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 5.2e-65 251.9 185 73.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.7e-65 251.5 164 81.7
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 6.7e-65 251.5 168 79.8
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.5e-64 250.4 180 76.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.0e-64 250.0 149 85.9
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.0e-64 250.0 170 78.2
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.0e-64 250.0 154 86.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.4e-64 248.8 152 84.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.4e-64 248.8 154 83.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.7e-64 248.4 160 82.5
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 5.7e-64 248.4 160 82.5
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 5.7e-64 248.4 166 79.5
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 9.7e-64 247.7 166 78.9
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-63 247.3 153 84.3
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-63 247.3 153 84.3
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.3e-63 247.3 152 85.5
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.2e-63 246.5 185 74.1
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.2e-63 246.5 167 77.8
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 3.7e-63 245.7 183 73.8
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 6.3e-63 245.0 165 77.0
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.1e-62 244.2 149 86.6
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.1e-62 242.7 153 81.0
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 9.1e-62 241.1 191 70.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 2.0e-61 240.0 164 79.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.0e-60 237.7 142 87.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.2e-60 236.5 145 85.5
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 5.0e-60 235.3 156 81.4
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 6.1e-58 228.4 131 90.1
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.4e-57 227.3 152 78.3
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.4e-57 227.3 143 83.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 6.8e-57 224.9 183 69.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 5.7e-56 221.9 202 65.3
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.3e-55 220.7 157 78.3
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 7.0e-54 214.9 220 69.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.2e-53 214.2 207 60.9
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.7e-53 213.0 185 64.9
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.7e-53 213.0 185 64.9
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.7e-53 213.0 137 81.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-52 210.3 136 83.8
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 3.6e-50 202.6 183 61.7
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.2e-48 197.6 121 83.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.8e-48 194.5 152 71.7
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.3e-47 191.8 189 62.4
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 3.5e-45 186.0 158 61.4
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.9e-44 183.0 182 58.8
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 9.5e-43 177.9 152 62.5
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.1e-42 176.8 109 81.7
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.8e-41 171.8 125 72.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 4.9e-39 165.6 167 59.3
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 3.6e-34 149.4 110 73.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.6e-34 149.4 94 79.8
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 8.0e-34 148.3 94 79.8
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-29 134.0 169 49.7
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-29 134.0 169 49.7
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-29 134.0 169 49.7
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.3e-28 131.0 173 49.1
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.2e-26 124.4 139 51.1
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.3e-20 103.6 185 42.7
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 7.3e-19 98.6 75 70.7
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 2.1e-18 97.1 53 88.7
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-17 94.0 74 68.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 2.7e-13 80.1 40 95.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.5e-13 79.7 51 78.4


User provided reference genes

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